Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PSCI_RS05105 Genome accession   NZ_AP014637
Coordinates   1098597..1099937 (+) Length   446 a.a.
NCBI ID   WP_045483644.1    Uniprot ID   A0A077LBF2
Organism   Pseudomonas sp. StFLB209     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1093597..1104937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSCI_RS05080 (PSCI_1003) pgeF 1093774..1094505 (-) 732 WP_045483629.1 peptidoglycan editing factor PgeF -
  PSCI_RS05085 (PSCI_1004) rluD 1094502..1095464 (-) 963 WP_045483632.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSCI_RS05090 (PSCI_1005) - 1095613..1096635 (+) 1023 WP_045483635.1 outer membrane protein assembly factor BamD -
  PSCI_RS05095 (PSCI_1006) - 1096770..1097012 (+) 243 WP_045483638.1 PP0621 family protein -
  PSCI_RS05100 (PSCI_1007) pilS 1097002..1098594 (+) 1593 WP_045483641.1 ATP-binding protein Regulator
  PSCI_RS05105 (PSCI_1008) pilR 1098597..1099937 (+) 1341 WP_045483644.1 sigma-54 dependent transcriptional regulator Regulator
  PSCI_RS05110 (PSCI_1009) thiO 1099934..1101031 (-) 1098 WP_045483647.1 glycine oxidase ThiO -
  PSCI_RS05115 (PSCI_1010) - 1101062..1101466 (-) 405 WP_045483649.1 type IV pilin protein -
  PSCI_RS05120 (PSCI_1011) - 1101479..1104640 (-) 3162 WP_045483652.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50316.60 Da        Isoelectric Point: 5.9865

>NTDB_id=66433 PSCI_RS05105 WP_045483644.1 1098597..1099937(+) (pilR) [Pseudomonas sp. StFLB209]
MTSRQKILIVDDEPDIRELLEITLGRMKLDTRAARNVAEAYDWLRREAFDLCLTDMRLPDGNGMELVQHIQQQYPQTPVA
MITAHGNLDLAIGALKAGAFDFLTKPVDLPRLRELVGSALRLRNGSEQDQSIDSRLLGDAPPMRTLRKQISKLARSQAPI
YISGESGSGKELVARLIHEQGPRADKAFVPVNCGAIASELMESEFFGHRKGSFTGAHEDKPGLFQVADGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRCIGGQQEQVVDVRILCATHKDLAQEVSAGRFRQDLYYRLNVIELRVPPLRERREDIELLAES
MLQRLAVSYAQPLARLHPQALEILKNYRFPGNVRELENMLERAYTLCENDQVLASDLRLNDSAPTQDSNAPSLANIENLE
DYLESIERQLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=66433 PSCI_RS05105 WP_045483644.1 1098597..1099937(+) (pilR) [Pseudomonas sp. StFLB209]
ATGACTTCAAGGCAGAAGATCCTGATCGTTGACGATGAGCCGGATATCCGTGAACTCCTGGAAATCACCCTGGGACGGAT
GAAACTCGACACCCGCGCCGCGCGCAATGTTGCCGAGGCCTATGACTGGCTCAGGCGCGAAGCCTTCGATCTGTGCCTGA
CTGACATGCGTCTGCCCGACGGTAACGGCATGGAGCTGGTGCAGCACATTCAGCAGCAGTACCCGCAGACACCGGTGGCG
ATGATTACTGCCCACGGCAACCTCGATCTGGCGATCGGCGCCCTCAAGGCCGGAGCTTTTGACTTTTTGACCAAGCCGGT
GGACCTGCCGCGCCTGCGCGAGCTGGTCGGCAGCGCCCTGCGCCTGCGCAACGGCAGCGAGCAGGACCAGAGTATCGACA
GCCGCCTGCTGGGCGATGCGCCGCCGATGCGCACCTTGCGCAAACAGATCAGCAAGCTGGCCCGCAGTCAGGCGCCGATC
TACATCAGTGGCGAATCGGGCAGCGGTAAAGAACTGGTTGCCCGGCTGATCCATGAACAAGGTCCACGGGCCGATAAAGC
CTTCGTGCCGGTCAACTGCGGCGCGATCGCCTCTGAGCTGATGGAGAGTGAGTTCTTCGGTCATCGCAAAGGCAGTTTTA
CCGGCGCCCACGAAGACAAACCGGGGCTGTTCCAGGTCGCCGATGGCGGCACCCTGTTTCTCGATGAAGTCGCCGACCTG
CCGCTGGCCATGCAGGTGAAACTGCTGCGCGCTATTCAGGAGAAGGCTGTGCGCTGCATTGGCGGGCAACAGGAACAGGT
CGTGGACGTGCGCATCCTGTGCGCAACCCACAAGGATCTGGCCCAGGAAGTCAGTGCCGGGCGGTTCCGCCAGGACCTGT
ATTACCGGCTCAATGTCATTGAGTTGCGCGTACCGCCATTGCGCGAGCGTCGCGAAGATATCGAGCTGCTGGCCGAAAGC
ATGTTGCAGCGCCTGGCGGTCAGTTACGCCCAACCGCTGGCCCGGCTCCATCCGCAGGCGCTGGAAATCCTCAAGAACTA
CCGTTTTCCCGGCAACGTCCGGGAGCTTGAGAATATGCTGGAGCGCGCCTACACCCTGTGCGAAAACGATCAGGTACTCG
CCTCGGACCTGCGCCTGAACGACAGCGCACCCACTCAGGACAGTAATGCCCCGAGCCTGGCCAATATCGAAAACCTTGAG
GATTATCTGGAGAGCATCGAGCGCCAGCTGATTCTTCAGGCGCTGGAAGAGACCCGCTGGAACCGCACAGCGGCAGCGCA
GCGCCTGAACCTGTCGTTTCGCTCGATGCGCTACCGGCTGAAAAAGCTGGGGCTCGATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-116)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A077LBF2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.279

99.552

0.789
  pilR Acinetobacter baumannii strain A118

49.458

100

0.511
  luxO Vibrio cholerae strain A1552

36.996

100

0.37

Multiple sequence alignment