Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSCI_RS00055 Genome accession   NZ_AP014637
Coordinates   11029..13245 (-) Length   738 a.a.
NCBI ID   WP_045481136.1    Uniprot ID   A0A077LCC2
Organism   Pseudomonas sp. StFLB209     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6029..18245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSCI_RS00025 (PSCI_0005) murB 6857..7876 (-) 1020 WP_045481119.1 UDP-N-acetylmuramate dehydrogenase -
  PSCI_RS00030 (PSCI_0006) kdsB 7902..8666 (-) 765 WP_045481122.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSCI_RS00035 (PSCI_0007) - 8663..8848 (-) 186 WP_045493619.1 Trm112 family protein -
  PSCI_RS00040 (PSCI_0008) lpxK 8860..9855 (-) 996 WP_045481125.1 tetraacyldisaccharide 4'-kinase -
  PSCI_RS00045 (PSCI_0009) - 9855..10286 (-) 432 WP_045481128.1 biopolymer transporter ExbD -
  PSCI_RS00050 (PSCI_0010) exbB 10283..10957 (-) 675 WP_045481131.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSCI_RS00055 (PSCI_0011) comA 11029..13245 (-) 2217 WP_045481136.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSCI_RS00060 (PSCI_0012) tssI 13448..15463 (+) 2016 WP_045481139.1 type VI secretion system tip protein VgrG -
  PSCI_RS00065 (PSCI_0013) - 15460..16311 (+) 852 WP_045481142.1 DUF4123 domain-containing protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 81335.73 Da        Isoelectric Point: 10.5495

>NTDB_id=66427 PSCI_RS00055 WP_045481136.1 11029..13245(-) (comA) [Pseudomonas sp. StFLB209]
MRTALVALALGLLTLRFLPALPPGWLLLLMPVLALMLLPWRTYPVALWLLGFSWACFSAKNALDDRLLPRLDGGTLWLEA
RVVGLPSANDGVTRFELDQPQSRRARLPQRIRVSWYGGPPVASGERWRLAVKLRRPDGLVNPGAFDYQAWLLAQRIGATG
TVLDGQRLAPARAAWRDAIRQRLLAVDAHGREGALAALVLGDGSGLSRDDWQILQETGTVHLLVISGQHVGLLAGAVYLL
IAALARRGLWPAALPWLPWACGLAFVAALGYGLLAGFEVPVRRACVMVGMVLLWRLRFRHLGLLWPLLVSLNLVLIFEPL
ASLQAGFWLSFAAVAVLILVFAGRLGRWRWWQAWSRAQWLIAIGLLPFLIVLELPVSLSAPLANLLAVPWVSLVVLPLAL
LGTLLLPVPWLGASLLWLAGGSMQLLFVALCWVAAWLPAWLPEALPLWVWLLCLLGAVLLLLPAGVPLRPLGWPLLLLCV
FVPRQPIAPGQAEVLQLDVGQGLAILIRTRHHNLLYDAGPASGEFDLGERVVVPVLRKAGVRRLDTLVISHAHADHAGGA
LAVQRSVPVERVLGGEPEAMHASLQAQPCRTGERWEWDGVRFETWRWDKAYNSNEASCVLMIDASGERLLLTGDIEAGAE
WAIRQADFDLRARWFQAPHHGSRTSSSAPLLRRVMPEGVLISRGRNNSFGHPHPIVVARYRALGIDIHDSAGQGAISWRL
GAFEQPRGERENRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=66427 PSCI_RS00055 WP_045481136.1 11029..13245(-) (comA) [Pseudomonas sp. StFLB209]
ATGCGTACTGCGCTGGTCGCACTGGCGCTGGGCTTGCTGACCCTGCGCTTTTTGCCGGCCCTGCCGCCTGGCTGGCTATT
GCTGCTGATGCCGGTGCTGGCCCTGATGCTATTGCCATGGCGCACTTATCCTGTTGCGTTATGGCTGCTGGGGTTCAGTT
GGGCCTGTTTTTCGGCCAAGAATGCCTTGGATGACCGGCTGCTGCCGCGCCTGGATGGCGGTACGCTATGGCTGGAAGCG
CGGGTGGTGGGGCTGCCGAGTGCGAACGATGGTGTGACGCGTTTTGAGCTGGATCAGCCGCAGTCGCGACGTGCCCGTTT
GCCGCAACGTATCCGGGTGAGCTGGTATGGCGGGCCGCCGGTGGCCAGTGGCGAGCGTTGGCGACTGGCGGTCAAGTTGC
GGCGGCCGGACGGGTTGGTCAATCCAGGCGCCTTTGATTATCAGGCCTGGCTGTTGGCACAGCGTATTGGTGCGACCGGG
ACAGTGCTCGATGGTCAGCGTCTGGCACCTGCCCGTGCCGCCTGGCGTGATGCTATCCGCCAGCGTTTGCTGGCCGTTGA
TGCACACGGCCGTGAAGGCGCTCTGGCGGCCCTGGTGCTGGGCGATGGTTCAGGGCTGTCACGGGATGACTGGCAGATAC
TGCAAGAAACCGGCACGGTGCATTTGCTGGTGATTTCCGGGCAGCATGTCGGTTTGCTGGCGGGCGCGGTGTATCTGTTG
ATTGCTGCGCTGGCGCGCCGGGGGCTGTGGCCTGCGGCCTTGCCCTGGTTACCTTGGGCGTGTGGGCTGGCCTTTGTTGC
CGCGCTGGGCTATGGCCTGCTTGCCGGTTTCGAGGTGCCGGTGCGGCGTGCCTGTGTAATGGTCGGGATGGTGCTGCTCT
GGCGCTTGCGCTTTCGGCATCTTGGTCTGCTCTGGCCCTTGCTGGTGTCGCTGAATCTGGTGCTGATCTTCGAGCCGCTG
GCCAGTCTGCAAGCGGGCTTCTGGTTGTCATTTGCGGCAGTGGCGGTGCTGATTCTGGTTTTCGCCGGCCGTTTGGGGCG
CTGGCGCTGGTGGCAGGCCTGGAGCCGTGCCCAATGGCTGATCGCAATCGGTCTGCTGCCTTTTCTGATTGTGCTTGAGC
TGCCGGTCAGCCTCAGTGCGCCGCTGGCCAATCTGCTGGCAGTGCCCTGGGTCAGTCTGGTGGTGTTGCCGCTGGCGTTG
CTCGGTACTTTGCTGCTGCCTGTGCCTTGGTTGGGGGCGAGCCTGCTATGGCTGGCCGGGGGCAGCATGCAATTGCTGTT
TGTTGCGCTGTGCTGGGTTGCCGCCTGGCTGCCGGCCTGGTTGCCGGAGGCCTTGCCGCTCTGGGTGTGGTTGCTGTGTC
TGCTGGGGGCTGTGCTGTTGTTGCTGCCAGCCGGTGTGCCACTGCGACCGTTGGGTTGGCCTTTATTATTACTCTGTGTG
TTTGTACCCAGACAACCGATTGCGCCGGGTCAGGCTGAGGTGTTGCAACTGGATGTCGGCCAGGGGCTGGCGATCCTGAT
ACGCACCCGCCATCACAACCTGCTGTATGACGCAGGCCCTGCCTCGGGTGAGTTTGACCTGGGCGAGCGGGTGGTGGTGC
CGGTGTTGCGCAAGGCCGGCGTGCGCCGCCTCGACACGCTGGTAATCAGCCATGCTCATGCCGATCATGCCGGTGGCGCC
CTGGCGGTGCAGCGCAGTGTGCCGGTTGAGCGGGTACTTGGCGGCGAGCCCGAGGCAATGCACGCATCGCTACAGGCGCA
GCCGTGCCGCACCGGCGAGCGCTGGGAGTGGGACGGCGTGCGTTTCGAGACCTGGCGTTGGGATAAGGCCTACAACAGCA
ACGAGGCGTCGTGTGTGTTGATGATCGATGCCAGCGGTGAGCGGCTGCTGTTGACCGGTGATATTGAAGCCGGGGCTGAG
TGGGCGATTCGCCAGGCTGACTTCGATCTGCGTGCCCGCTGGTTTCAGGCACCGCATCATGGCAGTCGCACCTCGTCTTC
GGCGCCCTTGTTGCGCCGGGTAATGCCTGAAGGCGTGCTGATTTCCCGTGGCCGCAATAACAGCTTCGGCCATCCGCACC
CGATAGTGGTTGCGCGCTATCGGGCGCTGGGCATCGATATTCACGACAGCGCCGGGCAAGGCGCGATCAGTTGGCGCCTG
GGAGCGTTCGAGCAACCGCGGGGTGAACGTGAAAACCGGCGTTTCTGGCGAGATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A077LCC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.925

97.154

0.602
  comA Ralstonia pseudosolanacearum GMI1000

33.685

100

0.389

Multiple sequence alignment