Detailed information
Bioinformatically predicted
Overview
| Name | exbB | Type | Machinery gene |
| Locus tag | PSCI_RS00050 | Genome accession | NZ_AP014637 |
| Coordinates | 10283..10957 (-) | Length | 224 a.a. |
| NCBI ID | WP_045481131.1 | Uniprot ID | A0A077L9T5 |
| Organism | Pseudomonas sp. StFLB209 | ||
| Function | ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 5283..15957
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSCI_RS00025 (PSCI_0005) | murB | 6857..7876 (-) | 1020 | WP_045481119.1 | UDP-N-acetylmuramate dehydrogenase | - |
| PSCI_RS00030 (PSCI_0006) | kdsB | 7902..8666 (-) | 765 | WP_045481122.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| PSCI_RS00035 (PSCI_0007) | - | 8663..8848 (-) | 186 | WP_045493619.1 | Trm112 family protein | - |
| PSCI_RS00040 (PSCI_0008) | lpxK | 8860..9855 (-) | 996 | WP_045481125.1 | tetraacyldisaccharide 4'-kinase | - |
| PSCI_RS00045 (PSCI_0009) | - | 9855..10286 (-) | 432 | WP_045481128.1 | biopolymer transporter ExbD | - |
| PSCI_RS00050 (PSCI_0010) | exbB | 10283..10957 (-) | 675 | WP_045481131.1 | MotA/TolQ/ExbB proton channel family protein | Machinery gene |
| PSCI_RS00055 (PSCI_0011) | comA | 11029..13245 (-) | 2217 | WP_045481136.1 | DNA internalization-related competence protein ComEC/Rec2 | Machinery gene |
| PSCI_RS00060 (PSCI_0012) | tssI | 13448..15463 (+) | 2016 | WP_045481139.1 | type VI secretion system tip protein VgrG | - |
Sequence
Protein
Download Length: 224 a.a. Molecular weight: 24225.43 Da Isoelectric Point: 7.3609
>NTDB_id=66426 PSCI_RS00050 WP_045481131.1 10283..10957(-) (exbB) [Pseudomonas sp. StFLB209]
MWELVKSGGWMMLPIILSSIVAAGIVIERLWTLRASRITPPHLLGQVWQWIQENKLDGEKLKQLRADSPLGEILAAGLAN
SRHGREIMKESIEEAAARVIHELERYLAALGSVAAMAPLLGLLGTVLGMIDIFASFNSAGNTGNAVVLAGGISKALICTA
SGLMVAIPAIFFHRYLQSRVDELVVGMEQQAIRLVEVVQGDREVDLVDAPVDLKSLARTGGKRK
MWELVKSGGWMMLPIILSSIVAAGIVIERLWTLRASRITPPHLLGQVWQWIQENKLDGEKLKQLRADSPLGEILAAGLAN
SRHGREIMKESIEEAAARVIHELERYLAALGSVAAMAPLLGLLGTVLGMIDIFASFNSAGNTGNAVVLAGGISKALICTA
SGLMVAIPAIFFHRYLQSRVDELVVGMEQQAIRLVEVVQGDREVDLVDAPVDLKSLARTGGKRK
Nucleotide
Download Length: 675 bp
>NTDB_id=66426 PSCI_RS00050 WP_045481131.1 10283..10957(-) (exbB) [Pseudomonas sp. StFLB209]
GTGTGGGAACTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATACTGAGTTCGATTGTCGCGGCCGGCATCGTCAT
TGAACGTCTCTGGACCTTGCGTGCCAGCCGAATCACCCCGCCACACTTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAAA
ACAAGCTCGACGGCGAAAAACTCAAGCAATTGCGCGCTGATTCGCCGCTGGGCGAGATTCTCGCCGCTGGCCTGGCCAAC
TCCCGGCATGGTCGCGAGATCATGAAAGAAAGCATCGAAGAGGCTGCGGCGCGGGTGATCCATGAGCTGGAGCGCTACCT
CGCGGCACTCGGGTCGGTGGCGGCCATGGCGCCATTGCTCGGCCTGCTCGGTACTGTACTGGGCATGATCGACATCTTCG
CTTCGTTCAATTCAGCCGGTAATACCGGCAATGCCGTGGTGTTGGCCGGTGGTATTTCCAAGGCGCTGATCTGTACTGCC
TCGGGCCTGATGGTGGCGATCCCGGCGATTTTCTTCCATCGCTACCTGCAAAGCCGGGTCGATGAGCTGGTGGTTGGCAT
GGAGCAGCAGGCGATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGTGAGGTAGACCTGGTCGACGCACCGGTCGATCTCA
AGTCCCTTGCCAGGACCGGAGGCAAGCGCAAGTGA
GTGTGGGAACTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATACTGAGTTCGATTGTCGCGGCCGGCATCGTCAT
TGAACGTCTCTGGACCTTGCGTGCCAGCCGAATCACCCCGCCACACTTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAAA
ACAAGCTCGACGGCGAAAAACTCAAGCAATTGCGCGCTGATTCGCCGCTGGGCGAGATTCTCGCCGCTGGCCTGGCCAAC
TCCCGGCATGGTCGCGAGATCATGAAAGAAAGCATCGAAGAGGCTGCGGCGCGGGTGATCCATGAGCTGGAGCGCTACCT
CGCGGCACTCGGGTCGGTGGCGGCCATGGCGCCATTGCTCGGCCTGCTCGGTACTGTACTGGGCATGATCGACATCTTCG
CTTCGTTCAATTCAGCCGGTAATACCGGCAATGCCGTGGTGTTGGCCGGTGGTATTTCCAAGGCGCTGATCTGTACTGCC
TCGGGCCTGATGGTGGCGATCCCGGCGATTTTCTTCCATCGCTACCTGCAAAGCCGGGTCGATGAGCTGGTGGTTGGCAT
GGAGCAGCAGGCGATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGTGAGGTAGACCTGGTCGACGCACCGGTCGATCTCA
AGTCCCTTGCCAGGACCGGAGGCAAGCGCAAGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| exbB | Pseudomonas stutzeri DSM 10701 |
76.214 |
91.964 |
0.701 |