Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   JCM16456_RS10375 Genome accession   NZ_AP014635
Coordinates   2348122..2348433 (-) Length   103 a.a.
NCBI ID   WP_068714145.1    Uniprot ID   -
Organism   Vibrio tritonius strain AM2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2343122..2353433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCM16456_RS10350 lapB 2343351..2344520 (-) 1170 WP_068714140.1 lipopolysaccharide assembly protein LapB -
  JCM16456_RS10355 - 2344546..2344821 (-) 276 WP_068714141.1 LapA family protein -
  JCM16456_RS10360 ihfB 2344960..2345274 (-) 315 WP_269450765.1 integration host factor subunit beta -
  JCM16456_RS10365 rpsA 2345481..2347151 (-) 1671 WP_068714143.1 30S ribosomal protein S1 -
  JCM16456_RS10370 cmk 2347262..2347945 (-) 684 WP_068714144.1 (d)CMP kinase -
  JCM16456_RS10375 comEA 2348122..2348433 (-) 312 WP_068714145.1 helix-hairpin-helix domain-containing protein Machinery gene
  JCM16456_RS10380 ppiD 2348575..2350425 (-) 1851 WP_068716028.1 peptidylprolyl isomerase -
  JCM16456_RS10385 - 2350578..2350850 (-) 273 WP_068714146.1 HU family DNA-binding protein -
  JCM16456_RS10390 lon 2351045..2353396 (-) 2352 WP_068714147.1 endopeptidase La -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11441.48 Da        Isoelectric Point: 10.7056

>NTDB_id=66407 JCM16456_RS10375 WP_068714145.1 2348122..2348433(-) (comEA) [Vibrio tritonius strain AM2]
MHYLLLRNPHWLLSTILFLGIPTFQAVAADNNPKSEQIQITVNINEASADEMSTLLKGVGLAKAKAIVKYRQANGPFKTK
NDLTKVKGIGKSILKKNEQRILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=66407 JCM16456_RS10375 WP_068714145.1 2348122..2348433(-) (comEA) [Vibrio tritonius strain AM2]
ATGCACTATTTATTATTACGAAACCCACATTGGCTACTCAGCACCATTTTGTTTTTGGGTATTCCTACCTTCCAAGCCGT
TGCGGCAGACAACAACCCTAAAAGTGAACAGATTCAGATAACCGTTAACATAAACGAGGCATCTGCGGATGAAATGTCCA
CTTTACTTAAAGGAGTGGGGCTGGCTAAAGCCAAAGCTATCGTAAAATACCGTCAAGCAAACGGTCCATTCAAAACGAAA
AATGACCTGACTAAAGTAAAAGGCATTGGTAAATCAATATTAAAGAAAAACGAACAGCGTATTCTGCTCTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(40-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

55.319

91.262

0.505
  comEA Vibrio cholerae C6706

52.577

94.175

0.495
  comEA Vibrio cholerae strain A1552

52.577

94.175

0.495
  comEA Vibrio campbellii strain DS40M4

51.613

90.291

0.466

Multiple sequence alignment