Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JCM16456_RS01725 Genome accession   NZ_AP014635
Coordinates   382932..383480 (+) Length   182 a.a.
NCBI ID   WP_068711815.1    Uniprot ID   -
Organism   Vibrio tritonius strain AM2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 377932..388480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCM16456_RS01710 uvrA 378044..380866 (-) 2823 WP_068711809.1 excinuclease ABC subunit UvrA -
  JCM16456_RS01715 galU 381003..381872 (-) 870 WP_068711811.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  JCM16456_RS01720 - 381989..382636 (-) 648 WP_068711813.1 helix-turn-helix transcriptional regulator -
  JCM16456_RS01725 ssb 382932..383480 (+) 549 WP_068711815.1 single-stranded DNA-binding protein Machinery gene
  JCM16456_RS01730 - 383550..384305 (-) 756 WP_162266521.1 replication initiation protein -
  JCM16456_RS01735 - 384520..384999 (-) 480 WP_068711819.1 YbaK/EbsC family protein -
  JCM16456_RS01740 - 385505..386728 (+) 1224 WP_068711821.1 DUF2075 domain-containing protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20248.38 Da        Isoelectric Point: 4.9269

>NTDB_id=66395 JCM16456_RS01725 WP_068711815.1 382932..383480(+) (ssb) [Vibrio tritonius strain AM2]
MASRGVNKVILIGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRQGGAPAGGMQQQQQGGWGQPQQPAMQQQPQYNAPQQPQQQQQQ
QPSQSAPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=66395 JCM16456_RS01725 WP_068711815.1 382932..383480(+) (ssb) [Vibrio tritonius strain AM2]
ATGGCAAGCCGTGGTGTGAACAAAGTAATTTTAATTGGCAACCTAGGTAACGATCCTGAAATTCGTTATATGCCAAATGG
TGGTGCGGTAGCAAACATCACTATCGCAACCTCAGAGTCCTGGCGTGATAAAGCAACAGGTGAACAGCGTGAGAAAACTG
AGTGGCACCGTGTTGCACTGTTTGGCAAACTTGCTGAAGTAGCGGGTGAGTATCTACGCAAAGGCTCTCAAGTATACATC
GAAGGTCAATTACAGACTCGTAAATGGCAAGATCAAAGTGGTCAAGACCGATACACAACAGAAGTTGTCGTGCAAGGTTT
TAATGGTGTAATGCAAATGCTAGGTGGTCGTCAAGGTGGCGCTCCGGCTGGTGGAATGCAGCAACAACAGCAAGGTGGTT
GGGGTCAACCTCAGCAACCTGCGATGCAGCAGCAACCGCAGTACAATGCTCCTCAGCAGCCACAACAGCAGCAACAACAA
CAACCTTCTCAGTCAGCGCCTCAGTATAATGAGCCGCCAATGGACTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.749

100

0.83
  ssb Glaesserella parasuis strain SC1401

55.556

100

0.577
  ssb Neisseria meningitidis MC58

47.027

100

0.478
  ssb Neisseria gonorrhoeae MS11

46.667

98.901

0.462

Multiple sequence alignment