Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MNR01_RS14775 Genome accession   NZ_CP093341
Coordinates   3289836..3291284 (-) Length   482 a.a.
NCBI ID   WP_241918517.1    Uniprot ID   -
Organism   Lysobacter sp. S4-A87     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3279747..3297388 3289836..3291284 within 0


Gene organization within MGE regions


Location: 3279747..3297388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNR01_RS14730 (MNR01_14730) - 3279747..3280604 (+) 858 WP_241918508.1 glycosyltransferase family 2 protein -
  MNR01_RS14735 (MNR01_14735) - 3280604..3281332 (+) 729 WP_241918509.1 class I SAM-dependent methyltransferase -
  MNR01_RS14740 (MNR01_14740) - 3281272..3282156 (+) 885 WP_241918510.1 class I SAM-dependent methyltransferase -
  MNR01_RS14745 (MNR01_14745) - 3282171..3283124 (+) 954 WP_241918511.1 hypothetical protein -
  MNR01_RS14750 (MNR01_14750) - 3283152..3284297 (-) 1146 WP_241918512.1 glycosyltransferase family 4 protein -
  MNR01_RS14755 (MNR01_14755) pilE 3284365..3284784 (-) 420 WP_241918513.1 pilin Machinery gene
  MNR01_RS14760 (MNR01_14760) - 3284971..3286491 (-) 1521 WP_241918514.1 hypothetical protein -
  MNR01_RS14765 (MNR01_14765) - 3286973..3288919 (-) 1947 WP_241918515.1 hypothetical protein -
  MNR01_RS14770 (MNR01_14770) pilE 3288993..3289421 (-) 429 WP_241918516.1 pilin Machinery gene
  MNR01_RS14775 (MNR01_14775) pilR 3289836..3291284 (-) 1449 WP_241918517.1 sigma-54 dependent transcriptional regulator Regulator
  MNR01_RS14780 (MNR01_14780) - 3291416..3293038 (-) 1623 WP_241918518.1 ATP-binding protein -
  MNR01_RS14785 (MNR01_14785) sucC 3293271..3294437 (+) 1167 WP_241918519.1 ADP-forming succinate--CoA ligase subunit beta -
  MNR01_RS14790 (MNR01_14790) sucD 3294450..3295325 (+) 876 WP_241918520.1 succinate--CoA ligase subunit alpha -
  MNR01_RS14795 (MNR01_14795) - 3295451..3297388 (+) 1938 WP_256451847.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 482 a.a.        Molecular weight: 52142.74 Da        Isoelectric Point: 6.1989

>NTDB_id=663834 MNR01_RS14775 WP_241918517.1 3289836..3291284(-) (pilR) [Lysobacter sp. S4-A87]
MAETRSALVVDDERDIRELLVMTLGRMGLRCDTASTIGEARSQLSRNRYDLCLTDMRLPDGSGMDLVAEISQKHPETPVA
MITAFGNVEAAVEALKAGAFDFVAKPVDLAVLRDLVRHALDLHESRRSAPPADAVAARLYGQSPAMTTLRQTIAKVARSQ
APVYIVGESGVGKELVARTIHAEGGRASGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQSADGGTLFLDEI
AELPLSMQVKLLRAIQEKSIRPVGANSEVPVDVRILSATHKDLGALVTDGRFRQDLYYRINVIELRVPPLRERQDDLSGL
VAMVLKRLATAQSRPVPAISDDALEVLRSYSFPGNVRELENILERALALAEDEILTADDLRLPQAAQAQNPVFPGASPAA
TASPPSPAPIAVPGQPMMAIDPRTLNPRDTASSPLPSYIEEIERAAIQQALQENRYNKTRTAAALGITFRALRYKLKKLG
ID

Nucleotide


Download         Length: 1449 bp        

>NTDB_id=663834 MNR01_RS14775 WP_241918517.1 3289836..3291284(-) (pilR) [Lysobacter sp. S4-A87]
ATGGCCGAAACACGTAGTGCACTGGTGGTTGACGACGAACGCGATATTCGCGAGCTGCTCGTCATGACATTGGGGAGGAT
GGGATTGCGTTGCGATACCGCCTCCACCATCGGGGAGGCACGCAGCCAGCTGTCCCGCAATCGCTATGACCTCTGCCTGA
CCGACATGCGCCTGCCGGACGGTTCGGGCATGGACCTGGTCGCAGAGATCAGCCAGAAGCACCCCGAGACCCCGGTCGCC
ATGATCACCGCCTTCGGCAATGTCGAAGCGGCGGTCGAGGCGCTGAAGGCCGGTGCGTTCGACTTTGTCGCCAAACCCGT
CGACCTGGCGGTGCTGCGCGACCTGGTCCGCCATGCCCTGGACCTCCACGAGAGCCGTCGCAGCGCGCCGCCGGCCGACG
CCGTCGCCGCCCGCCTGTACGGCCAGTCGCCGGCCATGACCACCCTGCGCCAGACCATCGCCAAGGTGGCGCGCAGCCAG
GCGCCGGTCTATATCGTCGGCGAGTCGGGCGTGGGCAAGGAGCTGGTCGCCCGCACCATCCACGCCGAAGGCGGTCGCGC
CAGCGGCCCGTTCGTTCCGGTCAATTGCGGCGCGATCCCGGCCGAGTTGATGGAGAGCGAGTTCTTCGGCCACAAGAAGG
GCAGCTTCACCGGCGCCCACGCCGACAAGCCGGGCCTGTTCCAGAGCGCCGACGGCGGCACGCTGTTCCTGGACGAGATC
GCCGAACTGCCGCTGTCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGATCCGCCCGGTCGGCGCCAACAG
CGAAGTACCGGTCGACGTGCGCATCCTGTCGGCCACCCACAAGGACCTGGGCGCGCTCGTCACCGACGGCCGCTTCCGCC
AGGACCTTTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCCAGGATGACCTGTCCGGCCTG
GTCGCAATGGTGCTCAAGCGCCTGGCCACGGCGCAGTCGCGCCCGGTGCCTGCGATCAGCGACGACGCCCTCGAGGTGCT
GCGCAGCTATTCCTTCCCGGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCGCTGGCCCTGGCCGAGGACGAGA
TCCTTACTGCCGACGACCTGCGCCTGCCGCAGGCAGCGCAGGCGCAGAACCCGGTATTCCCGGGCGCGAGCCCCGCCGCC
ACCGCCTCGCCGCCGTCACCGGCCCCGATTGCCGTACCCGGGCAGCCGATGATGGCGATCGACCCGCGCACGCTCAATCC
ACGCGACACAGCCAGCAGCCCGCTCCCCTCCTACATAGAGGAGATCGAGCGCGCGGCGATCCAGCAGGCACTGCAGGAAA
ACCGCTACAACAAGACGCGCACCGCAGCGGCGCTGGGCATCACGTTCCGGGCGCTGCGGTACAAGCTGAAGAAGCTGGGG
ATCGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(439-479)

Response regulator receiver domain (Response_reg)

(8-116)

Sigma-54 interaction domain (Sigma54_activat)

(140-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

59.623

99.17

0.591
  pilR Acinetobacter baumannii strain A118

47.934

100

0.481