Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MNR01_RS07895 Genome accession   NZ_CP093341
Coordinates   1734567..1735625 (-) Length   352 a.a.
NCBI ID   WP_241920364.1    Uniprot ID   -
Organism   Lysobacter sp. S4-A87     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1729567..1740625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNR01_RS07875 (MNR01_07875) - 1730580..1732520 (-) 1941 WP_241920361.1 type IV pilus secretin PilQ family protein -
  MNR01_RS07880 (MNR01_07880) - 1732540..1733064 (-) 525 WP_241920563.1 pilus assembly protein PilP -
  MNR01_RS07885 (MNR01_07885) pilO 1733105..1733779 (-) 675 WP_241920362.1 type 4a pilus biogenesis protein PilO -
  MNR01_RS07890 (MNR01_07890) - 1733776..1734567 (-) 792 WP_241920363.1 PilN domain-containing protein -
  MNR01_RS07895 (MNR01_07895) comM 1734567..1735625 (-) 1059 WP_241920364.1 pilus assembly protein PilM Machinery gene
  MNR01_RS07900 (MNR01_07900) - 1735871..1738363 (+) 2493 WP_241920365.1 penicillin-binding protein 1A -
  MNR01_RS07905 (MNR01_07905) - 1738583..1739248 (+) 666 WP_241920366.1 hypothetical protein -
  MNR01_RS07910 (MNR01_07910) - 1739326..1739910 (-) 585 WP_241920367.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37453.79 Da        Isoelectric Point: 4.5229

>NTDB_id=663824 MNR01_RS07895 WP_241920364.1 1734567..1735625(-) (comM) [Lysobacter sp. S4-A87]
MGIVTKSQPAVVGVDISSTAVKLLQLSRAGNRYRVEHYAVEPLPPNAVVEKNIVEVEAVGQAIKRAVARSGTRAKHAAAA
VAGSSVITKVISMPGDLDDDDLESQVELEAVNYVPYPIEEVNHDFEVLGPMPGSPDMLQVLLAASRSENVEVRASALEIG
GLTPKVMDVEAFALENAFALVADQLGGPRDGLVALVDSGATMTTLNVLRGGRSLYAREQVFGGKQLTDEVMRRYGLSYEE
AGLAKRQGGLPESYDAEVLEPFKEAMVQQISRLLQFFYAGSEFNRVDQIVLAGGCASIAGIAEMVEEQLGVPTTIANPLA
HMTLGPRVQAHALAQDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=663824 MNR01_RS07895 WP_241920364.1 1734567..1735625(-) (comM) [Lysobacter sp. S4-A87]
GTGGGGATCGTCACAAAAAGCCAGCCGGCAGTCGTCGGCGTGGATATCAGTTCGACTGCCGTCAAGCTGTTGCAGCTCTC
CCGGGCCGGCAACCGCTACCGCGTCGAGCATTACGCGGTTGAACCGCTGCCACCCAATGCCGTGGTCGAAAAGAACATCG
TCGAGGTCGAGGCGGTGGGACAGGCGATCAAGCGCGCCGTGGCGCGCTCTGGCACGCGGGCCAAACACGCCGCCGCCGCG
GTCGCCGGTTCATCGGTCATCACCAAGGTGATCTCGATGCCGGGCGACCTGGACGATGACGACCTGGAGTCGCAGGTCGA
GCTCGAGGCGGTCAATTACGTCCCGTACCCGATCGAAGAGGTCAACCATGACTTCGAGGTCCTGGGTCCGATGCCGGGCA
GCCCGGACATGCTCCAGGTACTGCTGGCAGCCTCCCGCTCGGAGAACGTCGAGGTCCGCGCATCCGCGCTGGAGATCGGC
GGCCTGACGCCCAAGGTGATGGACGTCGAAGCCTTCGCGCTCGAGAACGCCTTCGCCCTGGTCGCCGACCAGCTCGGTGG
TCCGCGCGATGGCCTGGTGGCCCTGGTCGACTCGGGCGCCACCATGACCACGCTCAACGTCCTTCGCGGCGGCCGCAGCC
TGTACGCACGCGAACAGGTGTTCGGCGGCAAGCAGCTCACCGACGAAGTGATGCGCCGCTACGGCCTGAGCTATGAGGAA
GCCGGACTGGCCAAGCGCCAGGGCGGCCTGCCGGAGAGCTACGACGCCGAAGTGCTGGAGCCGTTCAAGGAGGCGATGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCGGGCAGCGAATTCAACCGCGTCGACCAGATCGTGCTGGCCGGCG
GCTGTGCCTCGATCGCCGGCATCGCCGAGATGGTCGAAGAGCAGCTCGGCGTGCCGACCACCATCGCCAACCCGCTCGCC
CACATGACCCTGGGGCCGCGCGTGCAGGCGCACGCCCTGGCCCAGGACGCGCCGGCGCTGATGATCGCCTGTGGCCTCGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

50.144

98.58

0.494
  pilM Acinetobacter baumannii D1279779

50.144

98.58

0.494
  comM Acinetobacter nosocomialis M2

49.856

98.58

0.491
  pilM Legionella pneumophila strain ERS1305867

45.93

97.727

0.449