Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MNR01_RS06555 Genome accession   NZ_CP093341
Coordinates   1446366..1446881 (-) Length   171 a.a.
NCBI ID   WP_241920119.1    Uniprot ID   -
Organism   Lysobacter sp. S4-A87     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1441366..1451881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNR01_RS06535 (MNR01_06535) rfbD 1442917..1443816 (-) 900 WP_241920115.1 dTDP-4-dehydrorhamnose reductase -
  MNR01_RS06540 (MNR01_06540) rfbC 1443813..1444370 (-) 558 WP_241920116.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  MNR01_RS06545 (MNR01_06545) rfbA 1444367..1445251 (-) 885 WP_241920117.1 glucose-1-phosphate thymidylyltransferase RfbA -
  MNR01_RS06550 (MNR01_06550) rfbB 1445262..1446314 (-) 1053 WP_241920118.1 dTDP-glucose 4,6-dehydratase -
  MNR01_RS06555 (MNR01_06555) ssb 1446366..1446881 (-) 516 WP_241920119.1 single-stranded DNA-binding protein Machinery gene
  MNR01_RS06560 (MNR01_06560) - 1447068..1447397 (-) 330 WP_241920120.1 DUF5076 domain-containing protein -
  MNR01_RS06565 (MNR01_06565) - 1447491..1447850 (-) 360 WP_241920121.1 hypothetical protein -
  MNR01_RS06570 (MNR01_06570) - 1448091..1449104 (+) 1014 WP_241920122.1 polyprenyl synthetase family protein -
  MNR01_RS06575 (MNR01_06575) - 1449117..1449902 (-) 786 WP_241920123.1 dienelactone hydrolase family protein -
  MNR01_RS06580 (MNR01_06580) murD 1449984..1451402 (-) 1419 WP_241920124.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18482.30 Da        Isoelectric Point: 5.4119

>NTDB_id=663821 MNR01_RS06555 WP_241920119.1 1446366..1446881(-) (ssb) [Lysobacter sp. S4-A87]
MARGINKVILVGNLGDDPETKYTQGGMAVTKARLATTSVRKDREGNTQERTEWHRVTFFGKLGEIAGEYLRKGSQVYVEG
SIRYDKYTGQDGVERYSTDIIADEMQMLGGRGEGGGGGGGAGRGEFRGGGDRSERPARAPAARQESAPRREAPAAKSNDF
ADDFADDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=663821 MNR01_RS06555 WP_241920119.1 1446366..1446881(-) (ssb) [Lysobacter sp. S4-A87]
ATGGCACGTGGCATAAACAAGGTGATCCTGGTCGGCAATCTCGGTGACGATCCGGAAACCAAGTACACCCAGGGCGGCAT
GGCCGTGACCAAGGCCCGCCTGGCCACCACCAGCGTGCGCAAGGACCGTGAGGGCAACACCCAGGAACGCACCGAGTGGC
ACCGGGTGACCTTCTTCGGCAAGCTCGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGTAGCCAGGTCTACGTCGAAGGC
TCGATCCGTTACGACAAGTACACCGGCCAGGACGGCGTCGAGCGCTATTCCACCGACATCATCGCCGACGAGATGCAGAT
GCTCGGCGGCCGCGGTGAGGGCGGTGGCGGCGGCGGTGGTGCCGGTCGTGGCGAGTTCCGCGGTGGTGGCGATCGCAGCG
AACGTCCGGCACGCGCGCCGGCAGCACGCCAGGAATCCGCACCGCGTCGCGAGGCCCCGGCGGCCAAGAGCAATGACTTC
GCCGATGATTTCGCCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

48.295

100

0.497
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.497
  ssb Vibrio cholerae strain A1552

46.328

100

0.48
  ssb Glaesserella parasuis strain SC1401

39.583

100

0.444