Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MNO14_RS02985 Genome accession   NZ_CP093340
Coordinates   661406..662269 (-) Length   287 a.a.
NCBI ID   WP_241945318.1    Uniprot ID   -
Organism   Luteimonas sp. S4-F44     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 656406..667269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNO14_RS02970 (MNO14_02970) secA 656808..659564 (+) 2757 WP_241945315.1 preprotein translocase subunit SecA -
  MNO14_RS02975 (MNO14_02975) - 659803..660753 (+) 951 WP_241945316.1 Nudix family hydrolase -
  MNO14_RS02980 (MNO14_02980) coaE 660767..661393 (-) 627 WP_241945317.1 dephospho-CoA kinase -
  MNO14_RS02985 (MNO14_02985) pilD 661406..662269 (-) 864 WP_241945318.1 A24 family peptidase Machinery gene
  MNO14_RS02990 (MNO14_02990) pilC 662273..663433 (-) 1161 WP_241946241.1 type II secretion system F family protein Machinery gene
  MNO14_RS02995 (MNO14_02995) pilB 663656..665380 (-) 1725 WP_241945319.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MNO14_RS03000 (MNO14_03000) - 665494..665877 (-) 384 WP_241945320.1 hypothetical protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31311.02 Da        Isoelectric Point: 8.2420

>NTDB_id=663797 MNO14_RS02985 WP_241945318.1 661406..662269(-) (pilD) [Luteimonas sp. S4-F44]
MAFLDHNPALGYPLAAGLGLLVGSFLNVVILRLPRRLEWQWKRDSREILGEPDLYDPPPPGIVVERSHCPHCGHQLSWYE
NIPVVSWLALRGRCRSCKAPISVQYPAIELLTMLLFAACVWRFGFGWQGFGALVLTGFLIALSGIDARTQLLPDSLTLPL
MWLGLIASLDNLYMPAKPALLGAVVGYASLWSVWWLFKQATGKEGMGHGDFKLLAALGAWCGLAGLLPIILLSAVTGAIV
GSIILAVRGRDQATPIPFGPYLAVAGWVTFMWGHDLTALYLRVSGLQ

Nucleotide


Download         Length: 864 bp        

>NTDB_id=663797 MNO14_RS02985 WP_241945318.1 661406..662269(-) (pilD) [Luteimonas sp. S4-F44]
ATGGCTTTTCTCGATCACAACCCGGCCCTGGGCTATCCCCTCGCCGCCGGCCTCGGCCTGCTGGTGGGCAGCTTCCTCAA
TGTGGTGATCCTGCGTCTGCCCAGGCGCCTGGAATGGCAGTGGAAGCGCGACAGCCGCGAGATCCTCGGCGAACCCGACC
TCTACGATCCGCCGCCTCCCGGCATCGTCGTCGAACGCTCGCACTGCCCGCATTGCGGGCACCAGTTGTCGTGGTACGAG
AACATCCCGGTGGTCAGCTGGCTGGCGCTGCGCGGACGCTGCCGCAGCTGCAAGGCGCCGATCTCGGTCCAGTACCCCGC
GATCGAACTGCTGACAATGCTGTTGTTCGCGGCCTGCGTATGGCGGTTCGGCTTCGGCTGGCAGGGCTTCGGTGCGCTGG
TGCTGACCGGCTTCCTGATCGCGCTGTCGGGCATCGATGCGCGCACCCAGTTGCTGCCTGACTCGCTGACGTTGCCGCTG
ATGTGGCTGGGCCTCATCGCCAGCCTCGACAACCTGTACATGCCGGCCAAACCCGCGCTGCTGGGGGCGGTGGTCGGCTA
CGCCAGCCTGTGGTCGGTGTGGTGGCTGTTCAAACAGGCCACCGGCAAGGAGGGCATGGGCCACGGTGACTTCAAGCTGC
TGGCCGCGCTCGGCGCCTGGTGTGGCTTGGCGGGGCTGCTGCCGATCATCCTGCTGTCGGCGGTGACCGGCGCAATCGTC
GGCTCGATCATCCTTGCAGTGCGCGGACGCGATCAGGCGACACCGATTCCGTTCGGACCGTATCTGGCGGTGGCCGGCTG
GGTGACCTTCATGTGGGGCCACGACCTGACCGCGCTCTACCTGCGCGTGTCCGGGCTGCAGTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(133-241)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

48.611

100

0.488
  pilD Acinetobacter nosocomialis M2

48.582

98.258

0.477
  pilD Vibrio campbellii strain DS40M4

47.887

98.955

0.474
  pilD Vibrio cholerae strain A1552

48.897

94.774

0.463
  pilD Neisseria gonorrhoeae MS11

49.421

90.244

0.446