Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MNQ96_RS02045 Genome accession   NZ_CP093335
Coordinates   447645..448196 (+) Length   183 a.a.
NCBI ID   WP_241942139.1    Uniprot ID   -
Organism   Sphingopyxis granuli strain A2-E30     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 442645..453196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNQ96_RS02025 (MNQ96_02025) - 443839..444753 (+) 915 WP_083674930.1 DMT family transporter -
  MNQ96_RS02030 (MNQ96_02030) - 444753..445436 (+) 684 WP_082737038.1 COQ9 family protein -
  MNQ96_RS02035 (MNQ96_02035) - 445490..445741 (+) 252 WP_067111673.1 FeoA family protein -
  MNQ96_RS02040 (MNQ96_02040) feoB 445738..447612 (+) 1875 WP_241942138.1 ferrous iron transporter B -
  MNQ96_RS02045 (MNQ96_02045) ssb 447645..448196 (+) 552 WP_241942139.1 single-stranded DNA-binding protein Machinery gene
  MNQ96_RS02050 (MNQ96_02050) - 448225..448713 (+) 489 WP_241942140.1 MmcB family DNA repair protein -
  MNQ96_RS02055 (MNQ96_02055) - 449137..449763 (-) 627 WP_241942141.1 riboflavin synthase -
  MNQ96_RS02060 (MNQ96_02060) ribD 449771..450715 (-) 945 WP_241943189.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  MNQ96_RS02065 (MNQ96_02065) - 450753..451211 (-) 459 WP_104960213.1 hypothetical protein -
  MNQ96_RS02070 (MNQ96_02070) - 451544..452005 (-) 462 WP_241942142.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 18545.19 Da        Isoelectric Point: 5.0006

>NTDB_id=663754 MNQ96_RS02045 WP_241942139.1 447645..448196(+) (ssb) [Sphingopyxis granuli strain A2-E30]
MAGSVNKVILIGNLGADPEIKSFQNGGRIANIRIATSESWKDRMTGERKERTEWHNVVINGDGLVGVVERYLKKGSKVYV
EGSLRTRKWQDRDGNDRYTTEVVIAGMGGALTMLDGAPGGGGSRGGGDWGGGGSGSGDSWGQGGGGGSSGGGGWNQGGGG
SGGGGGGGGRPPFDDDLDDDVPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=663754 MNQ96_RS02045 WP_241942139.1 447645..448196(+) (ssb) [Sphingopyxis granuli strain A2-E30]
ATGGCAGGCAGCGTCAACAAGGTTATCCTGATCGGCAATCTGGGCGCCGATCCCGAAATCAAGTCGTTCCAGAACGGCGG
CCGGATCGCCAATATCCGCATCGCCACCTCCGAAAGCTGGAAGGACCGGATGACCGGCGAGCGCAAGGAGCGCACCGAAT
GGCACAATGTCGTCATCAACGGCGACGGGCTGGTCGGCGTCGTCGAGCGCTATCTGAAGAAGGGCAGCAAGGTCTATGTC
GAGGGGTCGCTGCGCACCCGCAAGTGGCAGGACCGCGACGGCAACGACCGCTATACGACCGAGGTGGTGATCGCCGGCAT
GGGCGGCGCGCTGACGATGCTCGACGGCGCCCCCGGCGGCGGCGGATCGCGCGGCGGCGGTGACTGGGGCGGCGGCGGAT
CGGGTTCGGGCGACAGCTGGGGACAGGGCGGCGGCGGCGGTTCTTCCGGCGGCGGTGGCTGGAACCAGGGCGGCGGCGGA
TCGGGCGGCGGTGGCGGCGGCGGCGGACGCCCGCCCTTCGACGACGACCTCGACGACGATGTTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.641

100

0.486
  ssb Vibrio cholerae strain A1552

47.514

98.907

0.47
  ssb Neisseria meningitidis MC58

36.066

100

0.361
  ssb Neisseria gonorrhoeae MS11

34.921

100

0.361