Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MNO08_RS24860 Genome accession   NZ_CP093333
Coordinates   5400130..5400645 (-) Length   171 a.a.
NCBI ID   WP_003232445.1    Uniprot ID   A0A0W0N9K8
Organism   Pseudomonas simiae strain H4-B59     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5395130..5405645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNO08_RS24835 (MNO08_24835) - 5395237..5396346 (-) 1110 WP_241912292.1 DUF3182 family protein -
  MNO08_RS24840 (MNO08_24840) - 5396518..5397477 (-) 960 WP_137206169.1 GlxA family transcriptional regulator -
  MNO08_RS24845 (MNO08_24845) - 5397575..5398138 (+) 564 WP_010206868.1 cysteine hydrolase family protein -
  MNO08_RS24850 (MNO08_24850) tam 5398160..5398921 (-) 762 WP_154974658.1 trans-aconitate 2-methyltransferase -
  MNO08_RS24855 (MNO08_24855) - 5399104..5400039 (+) 936 WP_042570816.1 hypothetical protein -
  MNO08_RS24860 (MNO08_24860) ssb 5400130..5400645 (-) 516 WP_003232445.1 single-stranded DNA-binding protein Machinery gene
  MNO08_RS24865 (MNO08_24865) - 5400655..5402049 (-) 1395 WP_010206876.1 MFS transporter -
  MNO08_RS24870 (MNO08_24870) uvrA 5402228..5405062 (+) 2835 WP_241912293.1 excinuclease ABC subunit UvrA -
  MNO08_RS24875 (MNO08_24875) bfr 5405129..5405593 (-) 465 WP_003176400.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19015.19 Da        Isoelectric Point: 5.9455

>NTDB_id=663724 MNO08_RS24860 WP_003232445.1 5400130..5400645(-) (ssb) [Pseudomonas simiae strain H4-B59]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=663724 MNO08_RS24860 WP_003232445.1 5400130..5400645(-) (ssb) [Pseudomonas simiae strain H4-B59]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACTGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTTGCCGAGATCGCTGGTGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCGCAGGGCGACCAACAAGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCCCGTCCGCAGCCAAGCCAGCAGCCACAGCGTGAGTCGCGCCCAGCGCCACAACAGGCTGCCCCGCAACCGGCTCCG
GATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.614
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474