Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MNQ95_RS03030 Genome accession   NZ_CP093331
Coordinates   635976..637034 (-) Length   352 a.a.
NCBI ID   WP_338423331.1    Uniprot ID   -
Organism   Pseudoxanthomonas daejeonensis strain S9-A64R     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 630976..642034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNQ95_RS03010 (MNQ95_03010) - 632046..633917 (-) 1872 WP_241953758.1 type IV pilus secretin PilQ family protein -
  MNQ95_RS03015 (MNQ95_03015) - 633933..634430 (-) 498 WP_241954342.1 pilus assembly protein PilP -
  MNQ95_RS03020 (MNQ95_03020) - 634481..635182 (-) 702 WP_241953759.1 type 4a pilus biogenesis protein PilO -
  MNQ95_RS03025 (MNQ95_03025) - 635179..635976 (-) 798 WP_241953760.1 PilN domain-containing protein -
  MNQ95_RS03030 (MNQ95_03030) comM 635976..637034 (-) 1059 WP_338423331.1 pilus assembly protein PilM Machinery gene
  MNQ95_RS03035 (MNQ95_03035) - 637253..639724 (+) 2472 WP_241953762.1 penicillin-binding protein 1A -
  MNQ95_RS03040 (MNQ95_03040) - 639821..640471 (+) 651 WP_241953763.1 hypothetical protein -
  MNQ95_RS03045 (MNQ95_03045) - 640607..641896 (-) 1290 WP_162411186.1 citrate synthase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37850.33 Da        Isoelectric Point: 4.3046

>NTDB_id=663669 MNQ95_RS03030 WP_338423331.1 635976..637034(-) (comM) [Pseudoxanthomonas daejeonensis strain S9-A64R]
MGLIPKSQSPLIGVDISSTAVKLLQLSRSGNRYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVNRSGTKVKNAAAA
VAGSAVITKIIPMPAELDENDMEAQVELEAVNYIPYPIEEVNLDFEVLGAMPSNPEMVQVLLAASRSENVELRESALELG
GLTAKVMDVEAFAVENAFALIADELPVGRDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGQAKRQGGLPETYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDQVVLAGGCASIVGLPEMVEEQLGVPTQVANPLA
QMTLGPRVQAQALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=663669 MNQ95_RS03030 WP_338423331.1 635976..637034(-) (comM) [Pseudoxanthomonas daejeonensis strain S9-A64R]
GTGGGGCTCATCCCGAAAAGTCAGTCGCCGCTTATTGGCGTCGACATCAGTTCGACTGCGGTAAAGCTCTTGCAGCTTTC
GCGCAGCGGCAACCGCTATCGCGTGGAACATTACGCGGTCGAACCCTTGCCACCCAATGCGGTGGTCGAGAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCGATTCGCCGCGCCGTCAACCGCTCCGGCACCAAGGTCAAGAACGCAGCCGCGGCG
GTGGCCGGATCGGCGGTGATCACCAAGATCATCCCCATGCCGGCCGAGCTGGACGAGAACGACATGGAAGCCCAGGTCGA
GCTCGAAGCGGTCAACTACATCCCGTACCCGATCGAGGAAGTAAACCTCGACTTCGAAGTGCTCGGCGCCATGCCCAGCA
ATCCGGAGATGGTGCAGGTGCTGCTGGCAGCCTCGCGTTCCGAGAACGTCGAGTTGCGCGAATCGGCGCTGGAGCTGGGC
GGACTGACGGCCAAGGTGATGGACGTAGAGGCCTTCGCGGTCGAGAACGCCTTCGCCCTGATCGCCGACGAGCTGCCGGT
GGGGCGTGACGGCGTGGTCGCCCTGGTCGACATCGGTGCGACCATGACTACGCTCAACGTCCTGCGCGGTGGACGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTGACCGACGAAGTCATGCGCCGCTATGGCCTGACCTACGAGGAA
GCTGGCCAGGCCAAGCGCCAGGGCGGCCTGCCCGAGACCTATGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACCGT
CCAGCAGATCAGCCGCCTCCTGCAGTTCTTCTATGCCGGCAGCGAGTTCAATCGCGTCGACCAGGTGGTCCTGGCCGGCG
GTTGTGCCTCCATCGTCGGCCTGCCCGAGATGGTCGAAGAGCAGTTGGGCGTGCCGACCCAGGTCGCCAATCCGCTGGCG
CAGATGACCCTCGGTCCGCGCGTGCAGGCGCAGGCACTGGCCCAGGACGCTCCGGCACTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.705

100

0.517
  pilM Acinetobacter baumannii D1279779

51.42

100

0.514
  comM Acinetobacter baylyi ADP1

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.578

99.716

0.474