Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MNO09_RS02365 Genome accession   NZ_CP093325
Coordinates   15180..15704 (+) Length   174 a.a.
NCBI ID   WP_002096168.1    Uniprot ID   A0A2C3M4C7
Organism   Bacillus sp. N5-665     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 10180..20704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNO09_RS02335 (MNO09_02290) spo0J 10652..11503 (+) 852 WP_001051813.1 stage 0 sporulation protein Spo0J -
  MNO09_RS02340 (MNO09_02295) yyaC 11524..12120 (-) 597 WP_001020739.1 spore protease YyaC -
  MNO09_RS02345 (MNO09_02300) - 12381..13238 (+) 858 WP_000362297.1 mechanosensitive ion channel family protein -
  MNO09_RS02350 (MNO09_02305) - 13259..13456 (+) 198 WP_000436051.1 DUF951 domain-containing protein -
  MNO09_RS02355 (MNO09_02310) ychF 13571..14671 (+) 1101 WP_000524656.1 redox-regulated ATPase YchF -
  MNO09_RS02360 (MNO09_02315) rpsF 14863..15153 (+) 291 WP_001233781.1 30S ribosomal protein S6 -
  MNO09_RS02365 (MNO09_02320) ssbA 15180..15704 (+) 525 WP_002096168.1 single-stranded DNA-binding protein Machinery gene
  MNO09_RS02370 (MNO09_02325) rpsR 15749..15982 (+) 234 WP_000918874.1 30S ribosomal protein S18 -
  MNO09_RS02375 (MNO09_02330) - 16063..16998 (+) 936 WP_000799154.1 YybS family protein -
  MNO09_RS02380 (MNO09_02335) - 17077..19050 (+) 1974 WP_001113911.1 DHH family phosphoesterase -
  MNO09_RS02385 (MNO09_02340) rplI 19047..19493 (+) 447 WP_000864225.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18808.59 Da        Isoelectric Point: 4.9222

>NTDB_id=663587 MNO09_RS02365 WP_002096168.1 15180..15704(+) (ssbA) [Bacillus sp. N5-665]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNPGGNSGNTGNSGFTKNDDPFSN
VGQPIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=663587 MNO09_RS02365 WP_002096168.1 15180..15704(+) (ssbA) [Bacillus sp. N5-665]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTGGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGACGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAGAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCGTTTG
GTCAGTCTAGTAATCCAGGTGGTAACTCAGGTAACACTGGTAACTCTGGATTTACAAAGAATGACGATCCATTTTCGAAT
GTTGGTCAACCGATTGACATTTCGGACGACGATTTACCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C3M4C7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.492

100

0.707
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

60.92

0.391
  ssb Glaesserella parasuis strain SC1401

35.556

100

0.368