Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AS4_RS00990 Genome accession   NZ_AP014630
Coordinates   217198..217806 (+) Length   202 a.a.
NCBI ID   WP_096732634.1    Uniprot ID   -
Organism   Acinetobacter guillouiae strain NBRC 110550     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 212198..222806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS4_RS00975 (AS4_01950) tenA 213654..214325 (-) 672 WP_004818427.1 thiaminase II -
  AS4_RS00980 (AS4_01960) - 214560..215642 (+) 1083 WP_171066888.1 DUF475 domain-containing protein -
  AS4_RS00985 (AS4_01970) - 215782..217146 (+) 1365 WP_016539108.1 MFS transporter -
  AS4_RS00990 (AS4_01980) ssb 217198..217806 (+) 609 WP_096732634.1 single-stranded DNA-binding protein Machinery gene
  AS4_RS00995 (AS4_01990) - 217890..218354 (-) 465 WP_096732636.1 hotdog fold domain-containing protein -
  AS4_RS01000 (AS4_02000) - 218505..219140 (+) 636 WP_034611308.1 TetR/AcrR family transcriptional regulator -
  AS4_RS01005 (AS4_02010) - 219174..219509 (-) 336 WP_056517215.1 hypothetical protein -
  AS4_RS01010 (AS4_02020) ahpC 219729..220292 (+) 564 WP_004718560.1 alkyl hydroperoxide reductase subunit C -
  AS4_RS01015 (AS4_02030) - 220363..221286 (-) 924 WP_096732638.1 LysR substrate-binding domain-containing protein -
  AS4_RS01020 (AS4_02040) ycaC 221418..222044 (-) 627 WP_004818434.1 isochorismate family cysteine hydrolase YcaC -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21906.64 Da        Isoelectric Point: 6.4829

>NTDB_id=66349 AS4_RS00990 WP_096732634.1 217198..217806(+) (ssb) [Acinetobacter guillouiae strain NBRC 110550]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNSGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEGAAADNGGYNQPRFNNNQQGGFNNNQGGGGYANQGNQGGGYGNA
NPQGGYGNGGNNVNQGFQSPKPAVAPSAPTAAPADLDDDLPF

Nucleotide


Download         Length: 609 bp        

>NTDB_id=66349 AS4_RS00990 WP_096732634.1 217198..217806(+) (ssb) [Acinetobacter guillouiae strain NBRC 110550]
ATGCGTGGTGTAAATAAAGTTATTTTAGTTGGTACTTTAGGTCGTGATCCTGAGACTAAAACTTTCCCAAATGGGGGTTC
TCTCACTCAATTTTCAATTGCGACAAGTGAATCTTGGACAGACAAAAATTCCGGTGAAAGAAAAGAACAAACGGAATGGC
ATCGTATTGTATTGCACAACCGTTTAGGTGAGATTGCACAGCAGTATTTACGTAAAGGTTCAAAAGTTTATATTGAAGGT
TCTTTACGTACCCGTCAGTGGACGGATCAAAATGGTCAAGAGCGCTATACCACTGAAATTCGTGGCGAACAAATGCAGAT
GCTTGATAACAACCGTCAACAAGGTGAAGGCGCTGCTGCTGACAATGGTGGTTATAACCAACCACGTTTCAATAACAACC
AGCAAGGTGGTTTTAACAACAACCAAGGCGGTGGCGGTTATGCGAATCAAGGTAATCAAGGCGGTGGTTACGGCAATGCC
AATCCACAAGGTGGCTATGGCAATGGCGGAAACAATGTAAACCAAGGTTTTCAATCGCCTAAACCTGCAGTTGCACCATC
AGCACCTACTGCTGCGCCTGCGGATTTGGATGATGACTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.51

100

0.5
  ssb Vibrio cholerae strain A1552

42.927

100

0.436
  ssb Neisseria meningitidis MC58

38.942

100

0.401
  ssb Neisseria gonorrhoeae MS11

38.942

100

0.401

Multiple sequence alignment