Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LIW09_RS10680 Genome accession   NZ_CP093311
Coordinates   2272350..2273408 (-) Length   352 a.a.
NCBI ID   WP_256645602.1    Uniprot ID   -
Organism   Thermomonas paludicola strain IMCC34681     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2267350..2278408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIW09_RS10655 - 2267407..2268399 (-) 993 WP_256645597.1 MoxR family ATPase -
  LIW09_RS10660 - 2268546..2270510 (-) 1965 WP_256645598.1 type IV pilus secretin PilQ family protein -
  LIW09_RS10665 - 2270526..2271047 (-) 522 WP_256645599.1 pilus assembly protein PilP -
  LIW09_RS10670 pilO 2271050..2271730 (-) 681 WP_256645600.1 type 4a pilus biogenesis protein PilO -
  LIW09_RS10675 - 2271727..2272350 (-) 624 WP_256645601.1 PilN domain-containing protein -
  LIW09_RS10680 comM 2272350..2273408 (-) 1059 WP_256645602.1 pilus assembly protein PilM Machinery gene
  LIW09_RS10685 - 2273649..2276159 (+) 2511 WP_256645603.1 penicillin-binding protein 1A -
  LIW09_RS10690 - 2276237..2276902 (+) 666 WP_256645604.1 hypothetical protein -
  LIW09_RS10695 - 2276960..2278249 (-) 1290 WP_256645605.1 citrate synthase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37669.33 Da        Isoelectric Point: 4.4276

>NTDB_id=663472 LIW09_RS10680 WP_256645602.1 2272350..2273408(-) (comM) [Thermomonas paludicola strain IMCC34681]
MGLGTKTQPPLIGVDISSTAVKLLQLARTGDRYRVEHYAVEPLPPNAVVEKNLVEVEAVGEAIRRAVARSGARVKNAAAA
VSGSSVITKMITMPAALDEDELESQIELEAVNYIPYPVEEVNLDFEVLGPVPGNSEMVQVLLAASRSENVEVRASALELG
GLTAKVIDVEAFCIENAFALMAPTLNVPRDGLVALVDVGATMTTLNVLRGGRSIYTRENVFGGKQLTDEVMRRYSLSYEE
AGLAKRQGGLPESYEIEVLDPFKEAMVQQISRLLQFFYAGSEFNRVDQVVLAGGCASIPGIAAMVEEQLGIPSVMANPLA
QMTLGPRVQAHALAQDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=663472 LIW09_RS10680 WP_256645602.1 2272350..2273408(-) (comM) [Thermomonas paludicola strain IMCC34681]
GTGGGTCTGGGGACAAAGACACAACCGCCGTTGATCGGCGTGGATATCAGTTCGACCGCAGTCAAGCTGTTGCAGCTTGC
GCGGACGGGCGACCGTTACCGCGTTGAGCACTACGCGGTAGAGCCGCTGCCGCCGAACGCCGTGGTCGAGAAGAACCTGG
TCGAGGTCGAGGCCGTGGGTGAGGCAATTCGCCGCGCCGTGGCCCGCTCCGGTGCCCGGGTCAAGAATGCCGCTGCCGCG
GTGTCCGGCTCGTCGGTCATCACCAAGATGATCACCATGCCGGCCGCGCTGGATGAGGACGAACTGGAGTCGCAGATCGA
ACTCGAGGCGGTCAATTACATCCCGTACCCGGTCGAGGAAGTGAACCTCGATTTCGAGGTGCTGGGGCCGGTGCCCGGCA
ATAGCGAGATGGTTCAGGTGCTGTTGGCGGCTTCGCGTTCCGAGAACGTCGAAGTGCGCGCCTCGGCGCTTGAACTGGGC
GGGTTGACCGCCAAGGTCATCGACGTGGAGGCGTTCTGCATCGAAAACGCCTTCGCACTGATGGCGCCGACGCTCAACGT
CCCGCGCGACGGGCTGGTTGCCTTGGTGGACGTGGGCGCCACCATGACGACGCTCAATGTCCTGCGCGGTGGTCGCAGCA
TCTACACCCGCGAAAACGTGTTCGGCGGAAAGCAGCTCACCGACGAGGTGATGCGTCGCTACAGCCTGAGCTACGAGGAA
GCCGGCTTGGCCAAGCGCCAGGGCGGCCTGCCTGAAAGTTATGAAATCGAAGTGCTGGATCCGTTCAAGGAAGCGATGGT
CCAGCAGATCAGCCGCTTGCTGCAGTTCTTCTATGCCGGCAGCGAATTCAACCGCGTCGATCAAGTGGTGCTGGCGGGTG
GCTGTGCTTCCATCCCCGGTATCGCCGCAATGGTCGAAGAGCAACTGGGCATCCCGAGCGTGATGGCCAACCCGCTGGCA
CAGATGACGCTTGGCCCGCGCGTGCAAGCGCACGCCCTGGCGCAGGACGCGCCCGCGCTCATGATTGCCTGCGGGCTCGC
ATTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  comM Acinetobacter baylyi ADP1

50

97.159

0.486
  pilM Legionella pneumophila strain ERS1305867

43.732

97.443

0.426