Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PST29_RS27005 Genome accession   NZ_AP014628
Coordinates   6061144..6061653 (-) Length   169 a.a.
NCBI ID   WP_011063767.1    Uniprot ID   -
Organism   Pseudomonas sp. St29     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6056144..6066653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PST29_RS26990 (PST29_5490) - 6056877..6058163 (+) 1287 WP_060844767.1 hypothetical protein -
  PST29_RS26995 (PST29_5491) - 6058167..6059993 (+) 1827 WP_060844768.1 hypothetical protein -
  PST29_RS27000 (PST29_5492) - 6060008..6061060 (+) 1053 WP_060844769.1 hypothetical protein -
  PST29_RS27005 (PST29_5493) ssb 6061144..6061653 (-) 510 WP_011063767.1 single-stranded DNA-binding protein Machinery gene
  PST29_RS27010 (PST29_5494) - 6061663..6063057 (-) 1395 WP_060844770.1 MFS transporter -
  PST29_RS27015 (PST29_5495) uvrA 6063236..6066070 (+) 2835 WP_060844771.1 excinuclease ABC subunit UvrA -
  PST29_RS27020 (PST29_5496) bfr 6066188..6066652 (-) 465 WP_060841335.1 bacterioferritin -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18784.96 Da        Isoelectric Point: 5.9455

>NTDB_id=66340 PST29_RS27005 WP_011063767.1 6061144..6061653(-) (ssb) [Pseudomonas sp. St29]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPAPQPQRESRPAPQQAAPQPAPDF
DSFDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=66340 PST29_RS27005 WP_011063767.1 6061144..6061653(-) (ssb) [Pseudomonas sp. St29]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGCGCACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTGGCCGAGATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAGATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGCAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCTCAGC
AGTCCCGTCCTGCGCCGCAACCGCAGCGTGAGTCGCGTCCGGCACCACAGCAGGCCGCTCCGCAGCCGGCACCGGACTTC
GACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.932

100

0.586
  ssb Glaesserella parasuis strain SC1401

48.066

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.497
  ssb Neisseria meningitidis MC58

47.159

100

0.491

Multiple sequence alignment