Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MM300_RS08825 Genome accession   NZ_CP093301
Coordinates   1908161..1908679 (-) Length   172 a.a.
NCBI ID   WP_255244739.1    Uniprot ID   -
Organism   Evansella sp. LMS18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1903161..1913679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM300_RS08805 (MM300_08780) rplI 1904342..1904785 (-) 444 WP_255244736.1 50S ribosomal protein L9 -
  MM300_RS08810 (MM300_08785) - 1904782..1906752 (-) 1971 WP_255244737.1 DHH family phosphoesterase -
  MM300_RS08815 (MM300_08790) - 1906765..1907703 (-) 939 WP_255244738.1 YybS family protein -
  MM300_RS08820 (MM300_08795) rpsR 1907886..1908113 (-) 228 WP_078593346.1 30S ribosomal protein S18 -
  MM300_RS08825 (MM300_08800) ssbA 1908161..1908679 (-) 519 WP_255244739.1 single-stranded DNA-binding protein Machinery gene
  MM300_RS08830 (MM300_08805) rpsF 1908722..1909009 (-) 288 WP_078593344.1 30S ribosomal protein S6 -
  MM300_RS08835 (MM300_08810) ychF 1909596..1910696 (-) 1101 WP_255244740.1 redox-regulated ATPase YchF -
  MM300_RS08840 (MM300_08815) - 1911315..1913330 (-) 2016 WP_255244741.1 molybdopterin-dependent oxidoreductase -
  MM300_RS08845 (MM300_08820) - 1913323..1913517 (-) 195 WP_255244742.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18642.33 Da        Isoelectric Point: 4.7621

>NTDB_id=663323 MM300_RS08825 WP_255244739.1 1908161..1908679(-) (ssbA) [Evansella sp. LMS18]
MINRVVLVGRLTKDPELRYTANGIAVATFTLAVNRPFSNQQGNREADFINCVIWRKQAENVANYLKKGSLAGVDGRIQTR
SFDNNEGRRVFMTEVVAESVQFLEPRGASGGGNREQYGSYEQGQGGSGYQNTPNQGSGQGFGQQGGSSGNSNDDPFANDG
KPIDINDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=663323 MM300_RS08825 WP_255244739.1 1908161..1908679(-) (ssbA) [Evansella sp. LMS18]
ATGATTAACCGAGTTGTTTTAGTCGGCCGCTTAACGAAGGATCCAGAATTACGGTATACTGCTAATGGCATTGCTGTTGC
AACTTTCACTTTGGCTGTTAACCGTCCTTTTTCCAATCAGCAGGGAAACCGGGAAGCCGATTTTATTAACTGTGTGATTT
GGAGGAAGCAGGCTGAAAACGTGGCAAACTACCTGAAAAAGGGAAGTTTGGCAGGTGTAGATGGCCGCATTCAGACACGA
AGCTTTGATAATAACGAAGGTCGCCGTGTATTTATGACAGAAGTTGTAGCAGAAAGCGTGCAGTTCCTGGAGCCGCGTGG
AGCATCTGGCGGCGGAAACCGTGAGCAGTATGGTTCTTATGAGCAGGGTCAGGGCGGCAGCGGTTATCAAAATACTCCGA
ACCAGGGATCTGGACAAGGATTTGGCCAGCAAGGCGGTTCATCAGGAAACAGTAATGACGATCCGTTTGCCAACGACGGC
AAACCTATCGACATTAATGATGATGATCTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.045

100

0.686
  ssb Latilactobacillus sakei subsp. sakei 23K

55.801

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

61.628

0.384
  ssb Neisseria meningitidis MC58

34.254

100

0.36