Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MNY35_RS14075 Genome accession   NZ_CP093298
Coordinates   2931457..2932146 (+) Length   229 a.a.
NCBI ID   WP_197093073.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MN-13     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2926457..2937146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNY35_RS14050 (MNY35_14040) degS 2926741..2927904 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  MNY35_RS14055 (MNY35_14045) degU 2927981..2928670 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MNY35_RS14060 (MNY35_14050) - 2928768..2929616 (+) 849 WP_015418336.1 DegV family protein -
  MNY35_RS14065 (MNY35_14055) comFA 2929724..2931109 (+) 1386 WP_033575221.1 DEAD/DEAH box helicase Machinery gene
  MNY35_RS14070 (MNY35_14060) - 2931167..2931451 (+) 285 WP_003151389.1 competence protein ComFB -
  MNY35_RS14075 (MNY35_14065) comFC 2931457..2932146 (+) 690 WP_197093073.1 phosphoribosyltransferase family protein Machinery gene
  MNY35_RS14080 (MNY35_14070) - 2932220..2932639 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  MNY35_RS14085 (MNY35_14075) flgM 2932709..2932975 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  MNY35_RS14090 (MNY35_14080) - 2932990..2933472 (+) 483 WP_003151394.1 flagellar protein FlgN -
  MNY35_RS14095 (MNY35_14085) flgK 2933488..2935005 (+) 1518 WP_033575223.1 flagellar hook-associated protein FlgK -
  MNY35_RS14100 (MNY35_14090) flgL 2935017..2935934 (+) 918 WP_015418330.1 flagellar hook-associated protein FlgL -
  MNY35_RS14105 (MNY35_14095) - 2936025..2936592 (+) 568 Protein_2736 DUF6470 family protein -
  MNY35_RS14110 (MNY35_14100) fliW 2936622..2937053 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25270.84 Da        Isoelectric Point: 8.0838

>NTDB_id=663196 MNY35_RS14075 WP_197093073.1 2931457..2932146(+) (comFC) [Bacillus amyloliquefaciens strain MN-13]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKHFLLRQNRSVY
LYNDAMKDSLARFKFRGDTKIIQAFERDFSAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=663196 MNY35_RS14075 WP_197093073.1 2931457..2932146(+) (comFC) [Bacillus amyloliquefaciens strain MN-13]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCGATTTGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCCAAAACGGAAAAGCACTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATACGAAAATCATTCAAGCATTTGAACG
TGACTTTTCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598