Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MNY35_RS14065 Genome accession   NZ_CP093298
Coordinates   2929724..2931109 (+) Length   461 a.a.
NCBI ID   WP_033575221.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MN-13     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2924724..2936109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNY35_RS14045 (MNY35_14035) - 2925871..2926518 (-) 648 WP_003151384.1 YigZ family protein -
  MNY35_RS14050 (MNY35_14040) degS 2926741..2927904 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  MNY35_RS14055 (MNY35_14045) degU 2927981..2928670 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MNY35_RS14060 (MNY35_14050) - 2928768..2929616 (+) 849 WP_015418336.1 DegV family protein -
  MNY35_RS14065 (MNY35_14055) comFA 2929724..2931109 (+) 1386 WP_033575221.1 DEAD/DEAH box helicase Machinery gene
  MNY35_RS14070 (MNY35_14060) - 2931167..2931451 (+) 285 WP_003151389.1 competence protein ComFB -
  MNY35_RS14075 (MNY35_14065) comFC 2931457..2932146 (+) 690 WP_197093073.1 phosphoribosyltransferase family protein Machinery gene
  MNY35_RS14080 (MNY35_14070) - 2932220..2932639 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  MNY35_RS14085 (MNY35_14075) flgM 2932709..2932975 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  MNY35_RS14090 (MNY35_14080) - 2932990..2933472 (+) 483 WP_003151394.1 flagellar protein FlgN -
  MNY35_RS14095 (MNY35_14085) flgK 2933488..2935005 (+) 1518 WP_033575223.1 flagellar hook-associated protein FlgK -
  MNY35_RS14100 (MNY35_14090) flgL 2935017..2935934 (+) 918 WP_015418330.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52529.97 Da        Isoelectric Point: 10.0818

>NTDB_id=663195 MNY35_RS14065 WP_033575221.1 2929724..2931109(+) (comFA) [Bacillus amyloliquefaciens strain MN-13]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWASSAKRQIT
YCRACVMMGRADELTSLYSWNQASENSWEPVKLSWEGTLTDGQKKAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
CQKLQSQLPVFLFVPSVDVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTLPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=663195 MNY35_RS14065 WP_033575221.1 2929724..2931109(+) (comFA) [Bacillus amyloliquefaciens strain MN-13]
ATGTCCGAGGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGTCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCTCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGAAGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTATGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTT
TGCCAAAAACTTCAATCACAGCTGCCTGTTTTCTTATTCGTTCCGTCTGTAGACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCTTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACCGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(325-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.043

99.783

0.629