Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MNY35_RS14055 Genome accession   NZ_CP093298
Coordinates   2927981..2928670 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain MN-13     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2922981..2933670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNY35_RS14035 (MNY35_14025) - 2923486..2924562 (+) 1077 WP_003151382.1 MraY family glycosyltransferase -
  MNY35_RS14040 (MNY35_14030) - 2924652..2925866 (-) 1215 WP_033575220.1 LCP family protein -
  MNY35_RS14045 (MNY35_14035) - 2925871..2926518 (-) 648 WP_003151384.1 YigZ family protein -
  MNY35_RS14050 (MNY35_14040) degS 2926741..2927904 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  MNY35_RS14055 (MNY35_14045) degU 2927981..2928670 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MNY35_RS14060 (MNY35_14050) - 2928768..2929616 (+) 849 WP_015418336.1 DegV family protein -
  MNY35_RS14065 (MNY35_14055) comFA 2929724..2931109 (+) 1386 WP_033575221.1 DEAD/DEAH box helicase Machinery gene
  MNY35_RS14070 (MNY35_14060) - 2931167..2931451 (+) 285 WP_003151389.1 competence protein ComFB -
  MNY35_RS14075 (MNY35_14065) comFC 2931457..2932146 (+) 690 WP_197093073.1 phosphoribosyltransferase family protein Machinery gene
  MNY35_RS14080 (MNY35_14070) - 2932220..2932639 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  MNY35_RS14085 (MNY35_14075) flgM 2932709..2932975 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  MNY35_RS14090 (MNY35_14080) - 2932990..2933472 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=663194 MNY35_RS14055 WP_003219701.1 2927981..2928670(+) (degU) [Bacillus amyloliquefaciens strain MN-13]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=663194 MNY35_RS14055 WP_003219701.1 2927981..2928670(+) (degU) [Bacillus amyloliquefaciens strain MN-13]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1