Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MNY64_RS13940 Genome accession   NZ_CP093249
Coordinates   3155113..3155643 (-) Length   176 a.a.
NCBI ID   WP_047254992.1    Uniprot ID   -
Organism   Moellerella wisconsensis strain W18-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3150113..3160643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNY64_RS13915 (MNY64_13920) - 3150189..3152405 (+) 2217 WP_241543347.1 AAA family ATPase -
  MNY64_RS13920 (MNY64_13925) - 3153300..3153521 (-) 222 WP_241543348.1 IS3 family transposase -
  MNY64_RS13925 (MNY64_13930) - 3153555..3154139 (-) 585 WP_338157485.1 IS3 family transposase -
  MNY64_RS13930 (MNY64_13935) - 3154162..3154431 (-) 270 WP_241543349.1 transposase -
  MNY64_RS13935 (MNY64_13940) - 3154476..3154916 (-) 441 WP_241543350.1 hypothetical protein -
  MNY64_RS13940 (MNY64_13945) ssb 3155113..3155643 (-) 531 WP_047254992.1 single-stranded DNA-binding protein Machinery gene
  MNY64_RS13945 (MNY64_13950) uvrA 3156193..3159027 (+) 2835 WP_241540600.1 excinuclease ABC subunit UvrA -
  MNY64_RS13950 (MNY64_13955) - 3159124..3160317 (-) 1194 WP_241543351.1 amino acid aminotransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19017.97 Da        Isoelectric Point: 4.9567

>NTDB_id=662836 MNY64_RS13940 WP_047254992.1 3155113..3155643(-) (ssb) [Moellerella wisconsensis strain W18-2]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKSSGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWTDQSGQDRYTTEVVVNIGGSMQMLGGRGSESSSQSQGNQGGWGQPQQPQAQQPSAPQFSGGSAPSRPQASA
PQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=662836 MNY64_RS13940 WP_047254992.1 3155113..3155643(-) (ssb) [Moellerella wisconsensis strain W18-2]
ATGGCCAGCAGAGGCGTAAATAAAGTTATTCTTATCGGTAATCTAGGACAGGATCCAGAAATCCGTTACATGCCAAATGG
TGGCGCTGTAGCCAACTTAACTCTGGCAACTTCTGAAAGCTGGCGTGACAAATCGTCTGGTGAAATGCGTGAAAAAACCG
AATGGCACCGTGTGGTAATCTTCGGAAAATTAGCCGAAGTGGCTGGTGAATATCTGAAGAAAGGTTCTCAGGTCTATATT
GAAGGTTCTCTGCAAACGCGTAAATGGACAGATCAGAGCGGTCAAGATCGCTATACAACAGAAGTTGTTGTTAATATCGG
CGGCAGCATGCAAATGCTGGGAGGCCGTGGTTCAGAGTCATCATCACAAAGCCAAGGCAACCAAGGCGGATGGGGACAAC
CTCAGCAGCCACAAGCTCAACAGCCGTCTGCGCCACAATTTAGCGGGGGTAGTGCACCATCTCGTCCACAAGCATCAGCG
CCACAGAGCAATGAACCTCCAATGGACTTCGATGACGATATTCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.519

100

0.739
  ssb Glaesserella parasuis strain SC1401

57.609

100

0.602
  ssb Neisseria meningitidis MC58

45.604

100

0.472
  ssb Neisseria gonorrhoeae MS11

45.604

100

0.472