Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PCAU_RS27370 Genome accession   NZ_AP014623
Coordinates   6036340..6036852 (-) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain StFRB508     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6031340..6041852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCAU_RS27345 (PCAU_5425) - 6031432..6032427 (+) 996 WP_096375570.1 lysylphosphatidylglycerol synthase domain-containing protein -
  PCAU_RS27350 (PCAU_5426) - 6032500..6033255 (-) 756 WP_096375571.1 alpha/beta hydrolase family protein -
  PCAU_RS27355 (PCAU_5427) - 6033245..6034354 (-) 1110 WP_096375572.1 DUF3182 family protein -
  PCAU_RS27360 (PCAU_5428) - 6034535..6035542 (-) 1008 WP_038575402.1 GlxA family transcriptional regulator -
  PCAU_RS27365 (PCAU_5429) - 6035646..6036200 (+) 555 WP_096375573.1 cysteine hydrolase family protein -
  PCAU_RS27370 (PCAU_5430) ssb 6036340..6036852 (-) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  PCAU_RS27375 (PCAU_5431) - 6036862..6038256 (-) 1395 WP_096375574.1 MFS transporter -
  PCAU_RS27380 (PCAU_5432) uvrA 6038437..6041271 (+) 2835 WP_096375575.1 excinuclease ABC subunit UvrA -
  PCAU_RS27385 (PCAU_5433) bfr 6041365..6041829 (-) 465 WP_007924173.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=66277 PCAU_RS27370 WP_009045846.1 6036340..6036852(-) (ssb) [Pseudomonas chlororaphis subsp. aurantiaca strain StFRB508]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=66277 PCAU_RS27370 WP_009045846.1 6036340..6036852(-) (ssb) [Pseudomonas chlororaphis subsp. aurantiaca strain StFRB508]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACTTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCACAGCCTTCGCAGGCACCACAGCGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5

Multiple sequence alignment