Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | MNY58_RS13045 | Genome accession | NZ_CP093217 |
| Coordinates | 2638230..2638742 (-) | Length | 170 a.a. |
| NCBI ID | WP_099091384.1 | Uniprot ID | A0A2C6WJE8 |
| Organism | Staphylococcus edaphicus strain CCM 8731 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2606358..2640303 | 2638230..2638742 | within | 0 |
| IScluster/Tn | 2636364..2637657 | 2638230..2638742 | flank | 573 |
Gene organization within MGE regions
Location: 2606358..2640303
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MNY58_RS12820 (MNY58_12815) | - | 2606358..2606711 (+) | 354 | WP_099091115.1 | helix-turn-helix transcriptional regulator | - |
| MNY58_RS12825 (MNY58_12820) | ahpC | 2607275..2607844 (+) | 570 | WP_099091114.1 | alkyl hydroperoxide reductase subunit C | - |
| MNY58_RS12830 (MNY58_12825) | ahpF | 2607861..2609384 (+) | 1524 | WP_099091113.1 | alkyl hydroperoxide reductase subunit F | - |
| MNY58_RS12835 (MNY58_12830) | - | 2609411..2611088 (-) | 1678 | Protein_2490 | IS1182 family transposase | - |
| MNY58_RS12840 (MNY58_12835) | - | 2611629..2612249 (+) | 621 | WP_099091328.1 | NDxxF motif lipoprotein | - |
| MNY58_RS12845 (MNY58_12840) | - | 2612558..2612773 (+) | 216 | WP_099091329.1 | hypothetical protein | - |
| MNY58_RS12850 (MNY58_12845) | - | 2612819..2613397 (-) | 579 | WP_099091330.1 | histidine phosphatase family protein | - |
| MNY58_RS12855 (MNY58_12850) | - | 2613535..2613900 (+) | 366 | WP_099091331.1 | DUF4870 domain-containing protein | - |
| MNY58_RS12860 (MNY58_12855) | - | 2614016..2614348 (+) | 333 | WP_099091332.1 | DUF4889 domain-containing protein | - |
| MNY58_RS12865 (MNY58_12860) | - | 2614446..2615777 (-) | 1332 | WP_099091333.1 | PepSY domain-containing protein | - |
| MNY58_RS12870 (MNY58_12865) | - | 2616006..2616632 (-) | 627 | WP_099091334.1 | LysE family translocator | - |
| MNY58_RS12875 (MNY58_12870) | - | 2616955..2617269 (-) | 315 | WP_099091335.1 | multidrug efflux SMR transporter | - |
| MNY58_RS12880 (MNY58_12875) | - | 2617266..2617595 (-) | 330 | WP_099091336.1 | multidrug efflux SMR transporter | - |
| MNY58_RS12885 (MNY58_12880) | - | 2618039..2618263 (+) | 225 | WP_099091337.1 | hypothetical protein | - |
| MNY58_RS12890 (MNY58_12885) | - | 2618305..2618724 (-) | 420 | WP_099091338.1 | GNAT family N-acetyltransferase | - |
| MNY58_RS12895 (MNY58_12890) | - | 2619002..2619181 (+) | 180 | WP_099091339.1 | hypothetical protein | - |
| MNY58_RS12900 (MNY58_12895) | merA | 2619260..2620582 (-) | 1323 | WP_099091340.1 | hypothiocyanous acid reductase MerA | - |
| MNY58_RS12905 (MNY58_12900) | hypR | 2620569..2621003 (-) | 435 | WP_099091341.1 | redox-sensitive transcriptional regulator HypR | - |
| MNY58_RS12910 (MNY58_12905) | - | 2621176..2621567 (-) | 392 | Protein_2505 | SRPBCC domain-containing protein | - |
| MNY58_RS12915 (MNY58_12910) | - | 2621737..2622117 (+) | 381 | WP_099091342.1 | VOC family protein | - |
| MNY58_RS12920 (MNY58_12915) | - | 2622208..2622954 (+) | 747 | WP_099091343.1 | poly-gamma-glutamate hydrolase family protein | - |
| MNY58_RS12925 (MNY58_12920) | - | 2623096..2624400 (+) | 1305 | WP_099091344.1 | potassium transporter TrkG | - |
| MNY58_RS12930 (MNY58_12925) | - | 2624444..2624857 (-) | 414 | WP_099091345.1 | alkylhydroperoxidase | - |
| MNY58_RS12935 (MNY58_12930) | - | 2624968..2625378 (+) | 411 | WP_099091346.1 | Lrp/AsnC family transcriptional regulator | - |
| MNY58_RS12940 (MNY58_12935) | - | 2625535..2626068 (+) | 534 | WP_099091347.1 | hypothetical protein | - |
| MNY58_RS12945 (MNY58_12940) | - | 2626430..2626942 (+) | 513 | WP_099091349.1 | hypothetical protein | - |
| MNY58_RS12950 (MNY58_12945) | - | 2627449..2628756 (-) | 1308 | WP_099091350.1 | N-acetylmuramoyl-L-alanine amidase | - |
| MNY58_RS12955 (MNY58_12950) | - | 2628945..2629133 (-) | 189 | WP_099091364.1 | hypothetical protein | - |
| MNY58_RS12960 (MNY58_12955) | - | 2629333..2629728 (-) | 396 | WP_099091351.1 | nuclear transport factor 2 family protein | - |
| MNY58_RS12965 (MNY58_12960) | - | 2629934..2630269 (+) | 336 | WP_099091352.1 | hypothetical protein | - |
| MNY58_RS12970 (MNY58_12965) | - | 2630372..2630629 (-) | 258 | WP_099091353.1 | hypothetical protein | - |
| MNY58_RS12975 (MNY58_12970) | - | 2630758..2630970 (+) | 213 | WP_099091354.1 | hypothetical protein | - |
| MNY58_RS12980 (MNY58_12975) | - | 2630991..2631179 (-) | 189 | WP_099091355.1 | hypothetical protein | - |
| MNY58_RS12985 (MNY58_12980) | - | 2631191..2631367 (-) | 177 | WP_167380401.1 | hypothetical protein | - |
| MNY58_RS12990 (MNY58_12985) | - | 2631648..2631812 (+) | 165 | WP_167380402.1 | hypothetical protein | - |
| MNY58_RS12995 (MNY58_12990) | - | 2631899..2632300 (+) | 402 | WP_099091357.1 | hypothetical protein | - |
| MNY58_RS13000 (MNY58_12995) | - | 2632462..2632848 (-) | 387 | WP_099091358.1 | YxeA family protein | - |
| MNY58_RS13005 (MNY58_13000) | - | 2633266..2633430 (-) | 165 | WP_167380403.1 | hypothetical protein | - |
| MNY58_RS13010 (MNY58_13005) | - | 2633562..2633813 (-) | 252 | WP_153043339.1 | hypothetical protein | - |
| MNY58_RS13625 | - | 2634275..2634397 (-) | 123 | WP_274521121.1 | hypothetical protein | - |
| MNY58_RS13015 (MNY58_13010) | - | 2634630..2634770 (+) | 141 | WP_167380404.1 | hypothetical protein | - |
| MNY58_RS13020 (MNY58_13015) | - | 2634868..2635110 (+) | 243 | WP_099091361.1 | hypothetical protein | - |
| MNY58_RS13025 (MNY58_13020) | - | 2635107..2635313 (+) | 207 | WP_099091362.1 | hypothetical protein | - |
| MNY58_RS13630 | - | 2635485..2635619 (+) | 135 | WP_274521122.1 | hypothetical protein | - |
| MNY58_RS13030 (MNY58_13025) | - | 2635638..2635871 (+) | 234 | WP_099091363.1 | hypothetical protein | - |
| MNY58_RS13035 (MNY58_13030) | - | 2635948..2637657 (-) | 1710 | Protein_2532 | IS1182 family transposase | - |
| MNY58_RS13040 (MNY58_13035) | rpsR | 2637938..2638180 (-) | 243 | WP_002484306.1 | 30S ribosomal protein S18 | - |
| MNY58_RS13045 (MNY58_13040) | ssbA | 2638230..2638742 (-) | 513 | WP_099091384.1 | single-stranded DNA-binding protein | Machinery gene |
| MNY58_RS13050 (MNY58_13045) | rpsF | 2638761..2639066 (-) | 306 | WP_099091385.1 | 30S ribosomal protein S6 | - |
| MNY58_RS13055 (MNY58_13050) | - | 2639491..2640303 (+) | 813 | WP_099091386.1 | GH25 family lysozyme | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18921.45 Da Isoelectric Point: 4.9163
>NTDB_id=662629 MNY58_RS13045 WP_099091384.1 2638230..2638742(-) (ssbA) [Staphylococcus edaphicus strain CCM 8731]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHGQEGNNNFQNFGGQQSGQNTSSYQSNNNNNSSSNNNQSDNPFANANGP
IDISDDDLPF
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHGQEGNNNFQNFGGQQSGQNTSSYQSNNNNNSSSNNNQSDNPFANANGP
IDISDDDLPF
Nucleotide
Download Length: 513 bp
>NTDB_id=662629 MNY58_RS13045 WP_099091384.1 2638230..2638742(-) (ssbA) [Staphylococcus edaphicus strain CCM 8731]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACTAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAACCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCGGATTTCATTAACTGTGTCGTTT
TTAGAAAACAAGCAGAGAATGTTAACAACTACTTATTTAAAGGTAGTTTAGCCGGCGTTGACGGTCGCATTCAATCACGC
AGCTACGAAAACCAAGAAGGTCGTCGTATTTTTGTGACTGAAGTGGTTTGTGATAGTGTTCAATTCCTTGAACCTAAGAA
TCAAAACCAACGTCATGGTCAAGAAGGAAATAATAATTTCCAAAACTTTGGCGGACAACAATCAGGACAAAATACATCTT
CTTATCAAAGCAATAATAACAACAACAGTTCATCAAACAATAATCAATCTGATAACCCATTTGCAAATGCAAACGGACCA
ATTGATATTAGTGATGATGACTTACCATTCTAA
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACTAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAACCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCGGATTTCATTAACTGTGTCGTTT
TTAGAAAACAAGCAGAGAATGTTAACAACTACTTATTTAAAGGTAGTTTAGCCGGCGTTGACGGTCGCATTCAATCACGC
AGCTACGAAAACCAAGAAGGTCGTCGTATTTTTGTGACTGAAGTGGTTTGTGATAGTGTTCAATTCCTTGAACCTAAGAA
TCAAAACCAACGTCATGGTCAAGAAGGAAATAATAATTTCCAAAACTTTGGCGGACAACAATCAGGACAAAATACATCTT
CTTATCAAAGCAATAATAACAACAACAGTTCATCAAACAATAATCAATCTGATAACCCATTTGCAAATGCAAACGGACCA
ATTGATATTAGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
60.656 |
100 |
0.653 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.621 |
100 |
0.6 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.091 |
64.706 |
0.382 |
| ssb | Glaesserella parasuis strain SC1401 |
32.979 |
100 |
0.365 |