Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MKP10_RS19370 Genome accession   NZ_CP093164
Coordinates   4130303..4131643 (+) Length   446 a.a.
NCBI ID   WP_045431581.1    Uniprot ID   -
Organism   Stutzerimonas zhaodongensis strain LQ01-5     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4125303..4136643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKP10_RS19345 (MKP10_19345) pgeF 4125316..4126050 (-) 735 WP_241529194.1 peptidoglycan editing factor PgeF -
  MKP10_RS19350 (MKP10_19350) rluD 4126047..4127021 (-) 975 WP_241529195.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MKP10_RS19355 (MKP10_19355) - 4127312..4128319 (+) 1008 WP_241529196.1 outer membrane protein assembly factor BamD -
  MKP10_RS19360 (MKP10_19360) - 4128380..4128613 (+) 234 WP_045424451.1 PP0621 family protein -
  MKP10_RS19365 (MKP10_19365) pilS 4128603..4130195 (+) 1593 WP_241529197.1 sensor histidine kinase Regulator
  MKP10_RS19370 (MKP10_19370) pilR 4130303..4131643 (+) 1341 WP_045431581.1 sigma-54-dependent transcriptional regulator Regulator
  MKP10_RS19375 (MKP10_19375) - 4131683..4132738 (-) 1056 WP_241529198.1 DUF2333 family protein -
  MKP10_RS19380 (MKP10_19380) - 4132956..4134569 (+) 1614 WP_241529199.1 response regulator -
  MKP10_RS23540 - 4134617..4136581 (+) 1965 WP_256452099.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49943.60 Da        Isoelectric Point: 6.5136

>NTDB_id=662048 MKP10_RS19370 WP_045431581.1 4130303..4131643(+) (pilR) [Stutzerimonas zhaodongensis strain LQ01-5]
MTVRQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEAKECLAREHYDLCLTDMRLPDGCGLELVQFIQQQYPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLGRLRELVNTALRLRTPNPNELTVDSRLLGASPPMNVLRKQIGKLARSQAPV
YISGESGSGKELVARLIHEQGPRHERPFVPVNCGAIPSELMESEFFGHKKGSFTGAMEDKPGLFQAANGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRSVGGAKEVVVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDIAQLAEV
MLRRLAQECGDTPARLQPDALAKLQSYRFPGNVRELENMLERAYTLCEGEEIKPSDLRLSDAPGMPENGEASLAQIDNLE
DHLEEVERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=662048 MKP10_RS19370 WP_045431581.1 4130303..4131643(+) (pilR) [Stutzerimonas zhaodongensis strain LQ01-5]
ATGACCGTTCGCCAGAAAGCACTGATCATCGATGACGAACCCGATATCCGTGAGCTCCTGGAGATCACCCTCGGACGCAT
GAAGCTGGACACCCGCAGCGCCCGCAACCTCAAGGAAGCCAAGGAGTGTCTGGCGCGCGAGCACTACGATCTGTGCTTGA
CCGATATGCGGCTGCCTGACGGATGCGGTTTGGAGCTGGTGCAGTTCATTCAGCAGCAGTACCCGCAATTGCCGGTCGCG
ATGATCACCGCCTATGGCAGTTTGGACACGGCCATTGGGGCGCTCAAGGCCGGGGCCTTCGACTTTCTCACCAAACCGGT
GGATCTCGGCCGGCTCCGCGAACTGGTCAATACCGCGCTGCGGCTGCGCACGCCGAACCCAAACGAACTTACAGTCGACA
GCCGCTTACTCGGCGCCTCGCCGCCGATGAATGTGCTGCGCAAACAGATCGGGAAACTGGCGCGCAGCCAGGCACCGGTT
TACATCAGTGGCGAATCCGGCAGTGGCAAGGAATTGGTCGCGCGGCTGATCCACGAGCAAGGACCCCGTCACGAACGGCC
ATTCGTTCCGGTCAACTGCGGGGCGATTCCCTCGGAGCTGATGGAAAGCGAATTCTTCGGGCATAAGAAGGGCAGCTTTA
CCGGGGCGATGGAAGACAAGCCCGGGCTGTTCCAGGCGGCCAATGGCGGCACGCTGTTTCTCGACGAAGTAGCCGATCTG
CCTCTGCCGATGCAAGTGAAACTGCTGCGGGCGATTCAGGAAAAGGCCGTGCGCTCAGTTGGCGGCGCCAAGGAAGTCGT
GGTCGATGTGCGGATTCTTTGCGCCACACACAAGGACTTGGCAAGCGAAGTCGCCGCGGGACGCTTTCGGCAGGACCTCT
ACTACCGGCTGAACGTCATCGAATTACGCGTGCCGCCCCTGCGCGAGCGCCGCGAGGATATTGCGCAGCTGGCCGAGGTG
ATGCTTCGCCGCCTCGCCCAGGAATGCGGCGACACGCCGGCCCGGCTGCAACCCGATGCGCTGGCAAAACTGCAGAGTTA
TCGCTTCCCCGGCAACGTGCGCGAGCTGGAAAACATGCTTGAGCGTGCCTACACGCTCTGTGAAGGCGAAGAAATCAAAC
CCAGCGACCTACGGCTTTCCGATGCACCCGGCATGCCGGAGAATGGCGAAGCAAGCCTGGCGCAGATCGACAATCTTGAA
GACCACCTCGAAGAGGTCGAGCGCAAACTGATCATGCAGGCGCTGGAAGAAACCCGCTGGAATCGCACCGCCGCCGCCCA
ACGGCTGGGGCTGTCGTTCCGCTCCATGCGATATCGGCTGAAGAAGCTTGGGCTGGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

83.747

99.327

0.832
  pilR Acinetobacter baumannii strain A118

49.455

100

0.509
  luxO Vibrio cholerae strain A1552

38.702

100

0.388