Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   MKP10_RS19365 Genome accession   NZ_CP093164
Coordinates   4128603..4130195 (+) Length   530 a.a.
NCBI ID   WP_241529197.1    Uniprot ID   -
Organism   Stutzerimonas zhaodongensis strain LQ01-5     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4123603..4135195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKP10_RS19345 (MKP10_19345) pgeF 4125316..4126050 (-) 735 WP_241529194.1 peptidoglycan editing factor PgeF -
  MKP10_RS19350 (MKP10_19350) rluD 4126047..4127021 (-) 975 WP_241529195.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MKP10_RS19355 (MKP10_19355) - 4127312..4128319 (+) 1008 WP_241529196.1 outer membrane protein assembly factor BamD -
  MKP10_RS19360 (MKP10_19360) - 4128380..4128613 (+) 234 WP_045424451.1 PP0621 family protein -
  MKP10_RS19365 (MKP10_19365) pilS 4128603..4130195 (+) 1593 WP_241529197.1 sensor histidine kinase Regulator
  MKP10_RS19370 (MKP10_19370) pilR 4130303..4131643 (+) 1341 WP_045431581.1 sigma-54-dependent transcriptional regulator Regulator
  MKP10_RS19375 (MKP10_19375) - 4131683..4132738 (-) 1056 WP_241529198.1 DUF2333 family protein -
  MKP10_RS19380 (MKP10_19380) - 4132956..4134569 (+) 1614 WP_241529199.1 response regulator -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59128.35 Da        Isoelectric Point: 8.7102

>NTDB_id=662047 MKP10_RS19365 WP_241529197.1 4128603..4130195(+) (pilS) [Stutzerimonas zhaodongensis strain LQ01-5]
MGTERLTFFGYKGRRILRLYHLYRVVIGLVLVLLISSDLHNDLMRMTNPTAFYYGAWLYLILNVFAAVLLQNPKRELPVL
ALALLDVTLLAALFYFAGGTPSGIGNLLIVAVAIANILLHGRVGFFIAAVAATGLIYLTFYLSLSDSAASSQYVQAAALG
TLCFAAALLVQGLTRRLQVSETLARQRAEEVANLEALNAQILQRMRTGILVLDPQERVLLANQGALELLGQQSLTGERLA
PRCPEIIKGLQRWRDNPTLRPRNFKATPDGATLQPSFATLQHGVKQDTLVFLEDISQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEVLDAADLRLTQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWVHRFASEFRQTLPPQ
QIVHVDTLGSSLQTRMDPNQLIQVLTNLVQNGLRYSGQKHDQAQVWLKLFRDETSDLPVLEVLDDGAGVPAEQVQNIFEP
FFTTENKGTGLGLYISRELCESNQARLDYRERDEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=662047 MKP10_RS19365 WP_241529197.1 4128603..4130195(+) (pilS) [Stutzerimonas zhaodongensis strain LQ01-5]
GTGGGAACTGAACGCCTGACGTTTTTCGGTTACAAGGGCCGACGAATCCTTCGGCTCTATCATCTCTATCGCGTCGTAAT
CGGCTTGGTGCTGGTTCTGCTCATTAGCAGCGACCTGCACAACGATTTGATGCGCATGACCAACCCGACGGCGTTCTACT
ACGGCGCCTGGCTCTATCTGATTCTCAACGTCTTCGCAGCCGTCTTGCTGCAGAACCCCAAGCGAGAGCTGCCGGTACTG
GCGCTCGCGTTACTGGACGTCACCCTGCTAGCCGCACTGTTCTACTTCGCAGGCGGTACGCCAAGCGGCATCGGTAACCT
GCTGATCGTAGCAGTCGCCATCGCCAATATCCTGCTGCACGGCCGCGTCGGCTTTTTCATCGCCGCAGTCGCCGCAACCG
GCCTCATCTATCTGACGTTCTACCTCAGCCTAAGCGACAGCGCGGCAAGCAGTCAGTACGTCCAGGCTGCCGCACTTGGC
ACACTGTGCTTCGCCGCCGCACTATTAGTGCAGGGCCTTACCAGACGGCTGCAAGTCAGCGAAACGCTTGCCCGCCAGCG
CGCCGAAGAGGTCGCAAACCTCGAAGCCCTGAACGCCCAGATTCTGCAGCGCATGCGCACCGGAATCCTTGTCCTCGATC
CTCAGGAACGTGTGCTGCTTGCCAATCAGGGCGCTCTCGAGCTGCTCGGACAACAGTCACTGACTGGCGAACGACTAGCG
CCGCGCTGCCCGGAAATTATCAAGGGCCTGCAACGCTGGCGTGACAATCCGACCCTGCGGCCGCGCAACTTCAAAGCCAC
GCCTGACGGCGCTACCTTGCAGCCGAGCTTCGCTACGCTGCAGCATGGCGTGAAGCAGGACACGCTGGTGTTTCTTGAAG
ACATCTCGCAGATCGCACAGAAGGCCCAGCAGCTAAAACTCGCATCGCTCGGGCGGCTGACCGCCAGCATCGCCCACGAA
ATCCGCAACCCGCTCGGGGCGATCAGCCATGCCGCCCAGCTGCTGCAGGAATCAGAGGTGCTGGACGCTGCGGATTTACG
GCTGACGCAGATCATTCAGGATCACTCGCGGCGCATGAACCTGGTCATCGAGAATGTGCTGCAGCTGTCGCGCCGACGCC
AGGCCGAGCCACAACTGCTGGACCTGAAATACTGGGTGCATCGATTCGCCAGCGAATTTCGCCAGACGCTACCGCCTCAG
CAAATTGTCCACGTGGATACCCTAGGCAGCTCACTGCAGACCCGCATGGACCCGAATCAACTGATTCAAGTGCTAACCAA
TCTGGTGCAGAACGGCCTGCGCTACAGTGGCCAGAAACATGACCAGGCACAGGTATGGCTGAAGCTCTTCCGAGACGAGA
CGAGCGACCTCCCCGTACTGGAGGTACTCGACGATGGTGCAGGCGTGCCGGCCGAGCAGGTCCAGAATATCTTCGAGCCG
TTCTTCACCACCGAGAACAAGGGTACGGGGCTGGGGCTGTATATCTCTCGCGAGCTCTGCGAAAGCAATCAGGCGCGGCT
GGATTACCGTGAACGAGACGAGGGAGGCAGCTGCTTTCGTATCGTCTTTGCGCATCCGCGCAAGCTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

PAS domain (PAS_8)

(201-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

64.34

100

0.643