Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   MKP10_RS15075 Genome accession   NZ_CP093164
Coordinates   3231863..3232180 (-) Length   105 a.a.
NCBI ID   WP_045426055.1    Uniprot ID   -
Organism   Stutzerimonas zhaodongensis strain LQ01-5     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3226863..3237180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKP10_RS15040 (MKP10_15040) - 3227186..3227629 (-) 444 WP_241528642.1 Hsp20 family protein -
  MKP10_RS15045 (MKP10_15045) - 3227722..3228468 (+) 747 WP_241528643.1 SDR family oxidoreductase -
  MKP10_RS15050 (MKP10_15050) - 3228465..3229439 (-) 975 WP_241528645.1 tRNA dihydrouridine synthase -
  MKP10_RS15055 (MKP10_15055) - 3229603..3230070 (-) 468 WP_241528646.1 tetratricopeptide repeat protein -
  MKP10_RS15060 (MKP10_15060) - 3230070..3230465 (-) 396 WP_241528647.1 hypothetical protein -
  MKP10_RS15065 (MKP10_15065) - 3230447..3230779 (-) 333 WP_241528648.1 helix-turn-helix domain-containing protein -
  MKP10_RS15070 (MKP10_15070) - 3230922..3231389 (-) 468 WP_241528649.1 YkvA family protein -
  MKP10_RS15075 (MKP10_15075) comEA/comE1 3231863..3232180 (-) 318 WP_045426055.1 ComEA family DNA-binding protein Machinery gene
  MKP10_RS15080 (MKP10_15080) flgL 3232307..3233581 (-) 1275 WP_241528650.1 flagellar hook-associated protein FlgL -
  MKP10_RS15085 (MKP10_15085) flgK 3233593..3235626 (-) 2034 WP_241528651.1 flagellar hook-associated protein FlgK -
  MKP10_RS15090 (MKP10_15090) flgJ 3235629..3236828 (-) 1200 WP_241528652.1 flagellar assembly peptidoglycan hydrolase FlgJ -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 10782.44 Da        Isoelectric Point: 9.7693

>NTDB_id=662040 MKP10_RS15075 WP_045426055.1 3231863..3232180(-) (comEA/comE1) [Stutzerimonas zhaodongensis strain LQ01-5]
MLKSFISASIFALLAGVSLSSFAGPTKSADPVVVATAQQAAPININSADAETLTRELKGIGATKAKAIVAYREAHGPFTA
VDELLEVKGIGAATLEKNRTKLGVN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=662040 MKP10_RS15075 WP_045426055.1 3231863..3232180(-) (comEA/comE1) [Stutzerimonas zhaodongensis strain LQ01-5]
ATGCTTAAGTCATTTATATCCGCTTCAATATTCGCACTGCTCGCTGGCGTCTCTCTCAGCAGTTTCGCTGGCCCGACCAA
GTCTGCTGACCCCGTAGTGGTTGCAACGGCCCAGCAAGCTGCGCCGATCAACATCAATTCGGCCGACGCCGAAACCCTGA
CCCGCGAACTCAAGGGTATTGGCGCAACAAAGGCCAAGGCGATCGTTGCTTATCGCGAAGCGCATGGCCCATTCACCGCC
GTCGACGAGCTCCTCGAAGTTAAAGGAATCGGTGCGGCCACTTTAGAAAAAAATCGAACCAAACTGGGCGTTAACTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(39-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

49.038

99.048

0.486
  comE1/comEA Haemophilus influenzae Rd KW20

45.918

93.333

0.429
  comEA Vibrio cholerae C6706

48.148

77.143

0.371
  comEA Vibrio cholerae strain A1552

48.148

77.143

0.371