Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AS19_RS02240 Genome accession   NZ_AP014613
Coordinates   470769..471287 (+) Length   172 a.a.
NCBI ID   WP_011587716.1    Uniprot ID   Q0VSH0
Organism   Alcanivorax sp. NBRC 101098     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 465769..476287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS19_RS02230 (AS19_04430) - 468395..469045 (-) 651 WP_011587714.1 response regulator transcription factor -
  AS19_RS02235 (AS19_04440) - 469312..470679 (+) 1368 WP_046961655.1 MFS transporter -
  AS19_RS02240 (AS19_04450) ssb 470769..471287 (+) 519 WP_011587716.1 single-stranded DNA-binding protein Machinery gene
  AS19_RS02245 (AS19_04460) gspN 471314..472042 (+) 729 WP_046961656.1 type II secretion system protein N -
  AS19_RS02250 (AS19_04470) - 472128..472988 (+) 861 WP_011587718.1 type II secretion system protein N -
  AS19_RS02255 (AS19_04480) gspD 473000..475120 (+) 2121 WP_231483397.1 type II secretion system secretin GspD -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18402.06 Da        Isoelectric Point: 4.7790

>NTDB_id=66201 AS19_RS02240 WP_011587716.1 470769..471287(+) (ssb) [Alcanivorax sp. NBRC 101098]
MARGVNKVILIGNLGADPETRFMPSGGAVTNVRLATSESWKDRQSGQMQERTEWHRVVLFNKLGEIAGEYLKKGSKVYIE
GSIRTRKWQGQDGQDRYTTEIVANEMQMLDGRGDGGGQGGYSQSAAPQGNQGGYGNDGQPGAGSGQPAQNQNTNQGGGFS
GPADDFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=66201 AS19_RS02240 WP_011587716.1 470769..471287(+) (ssb) [Alcanivorax sp. NBRC 101098]
ATGGCGCGCGGCGTTAATAAGGTAATTTTGATCGGTAATCTGGGTGCGGATCCGGAAACCCGCTTTATGCCCAGCGGTGG
CGCGGTCACGAATGTGCGCTTGGCCACCAGCGAGAGCTGGAAAGACCGCCAGAGCGGCCAAATGCAGGAACGCACTGAGT
GGCATCGGGTGGTGCTCTTCAACAAACTAGGCGAGATTGCCGGTGAGTATCTGAAAAAGGGCTCCAAAGTTTACATTGAA
GGCTCTATCCGTACCCGCAAATGGCAAGGGCAGGATGGTCAAGACCGTTATACTACCGAGATTGTGGCCAACGAGATGCA
GATGTTAGATGGCCGTGGTGATGGTGGTGGTCAGGGTGGTTATTCCCAGTCCGCTGCCCCTCAAGGCAATCAGGGTGGCT
ACGGTAATGATGGTCAGCCTGGAGCCGGTAGTGGCCAGCCAGCACAGAACCAAAACACCAATCAGGGCGGTGGTTTCAGC
GGCCCAGCGGATGACTTTGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0VSH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.111

100

0.587
  ssb Glaesserella parasuis strain SC1401

50.267

100

0.547
  ssb Neisseria meningitidis MC58

47.253

100

0.5
  ssb Neisseria gonorrhoeae MS11

47.253

100

0.5

Multiple sequence alignment