Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MM522_RS18615 Genome accession   NZ_CP093067
Coordinates   3623688..3624206 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain ATC-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3618688..3629206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM522_RS18585 (MM522_18585) yyaJ 3619192..3620547 (+) 1356 WP_029318525.1 MFS transporter -
  MM522_RS18590 (MM522_18590) maa 3620581..3621135 (-) 555 WP_003226849.1 sugar O-acetyltransferase -
  MM522_RS18595 (MM522_18595) yyaH 3621153..3621533 (-) 381 WP_048654831.1 VOC family protein -
  MM522_RS18600 (MM522_18600) ccpB 3621589..3622524 (-) 936 WP_048654830.1 transcriptional regulator CcpB -
  MM522_RS18605 (MM522_18605) xth 3622583..3623341 (-) 759 WP_029726087.1 exodeoxyribonuclease III -
  MM522_RS18610 (MM522_18610) rpsR 3623405..3623644 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  MM522_RS18615 (MM522_18615) ssbA 3623688..3624206 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  MM522_RS18620 (MM522_18620) rpsF 3624247..3624534 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  MM522_RS18625 (MM522_18625) ychF 3624645..3625745 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  MM522_RS18630 (MM522_18630) yyaE 3625872..3627875 (-) 2004 WP_241495671.1 molybdopterin-dependent oxidoreductase -
  MM522_RS18635 (MM522_18635) yyzM 3627926..3628132 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=661878 MM522_RS18615 WP_003219228.1 3623688..3624206(-) (ssbA) [Bacillus subtilis strain ATC-3]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=661878 MM522_RS18615 WP_003219228.1 3623688..3624206(-) (ssbA) [Bacillus subtilis strain ATC-3]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378