Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MM522_RS15690 Genome accession   NZ_CP093067
Coordinates   3043911..3044600 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain ATC-3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3038911..3049600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM522_RS15655 (MM522_15655) flgN 3039092..3039574 (-) 483 WP_014478127.1 flagellar protein FlgN -
  MM522_RS15660 (MM522_15660) flgM 3039590..3039856 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  MM522_RS15665 (MM522_15665) yvyF 3039937..3040356 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  MM522_RS15670 (MM522_15670) comFC 3040429..3041151 (-) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  MM522_RS15675 (MM522_15675) comFB 3041115..3041411 (-) 297 WP_014478130.1 late competence protein ComFB -
  MM522_RS15680 (MM522_15680) comFA 3041471..3042862 (-) 1392 WP_101172232.1 ATP-dependent helicase ComFA Machinery gene
  MM522_RS15685 (MM522_15685) fakBA 3042968..3043813 (-) 846 WP_003244125.1 DegV family protein -
  MM522_RS15690 (MM522_15690) degU 3043911..3044600 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MM522_RS15695 (MM522_15695) degS 3044683..3045840 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  MM522_RS15700 (MM522_15700) yvyE 3046057..3046710 (+) 654 WP_003227979.1 YigZ family protein -
  MM522_RS15705 (MM522_15705) tagV 3046710..3047885 (+) 1176 WP_029318786.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  MM522_RS15710 (MM522_15710) tagO 3047958..3049034 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=661869 MM522_RS15690 WP_003219701.1 3043911..3044600(-) (degU) [Bacillus subtilis strain ATC-3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=661869 MM522_RS15690 WP_003219701.1 3043911..3044600(-) (degU) [Bacillus subtilis strain ATC-3]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1