Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MM522_RS15670 Genome accession   NZ_CP093067
Coordinates   3040429..3041151 (-) Length   240 a.a.
NCBI ID   WP_033884179.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATC-3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3035429..3046151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM522_RS15635 (MM522_15635) fliW 3035569..3036000 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  MM522_RS15640 (MM522_15640) yviE 3036021..3036596 (-) 576 WP_015384781.1 DUF6470 family protein -
  MM522_RS15645 (MM522_15645) flgL 3036643..3037539 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  MM522_RS15650 (MM522_15650) flgK 3037550..3039073 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  MM522_RS15655 (MM522_15655) flgN 3039092..3039574 (-) 483 WP_014478127.1 flagellar protein FlgN -
  MM522_RS15660 (MM522_15660) flgM 3039590..3039856 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  MM522_RS15665 (MM522_15665) yvyF 3039937..3040356 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  MM522_RS15670 (MM522_15670) comFC 3040429..3041151 (-) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  MM522_RS15675 (MM522_15675) comFB 3041115..3041411 (-) 297 WP_014478130.1 late competence protein ComFB -
  MM522_RS15680 (MM522_15680) comFA 3041471..3042862 (-) 1392 WP_101172232.1 ATP-dependent helicase ComFA Machinery gene
  MM522_RS15685 (MM522_15685) fakBA 3042968..3043813 (-) 846 WP_003244125.1 DegV family protein -
  MM522_RS15690 (MM522_15690) degU 3043911..3044600 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MM522_RS15695 (MM522_15695) degS 3044683..3045840 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27544.83 Da        Isoelectric Point: 9.3157

>NTDB_id=661867 MM522_RS15670 WP_033884179.1 3040429..3041151(-) (comFC) [Bacillus subtilis strain ATC-3]
MSHEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=661867 MM522_RS15670 WP_033884179.1 3040429..3041151(-) (comFC) [Bacillus subtilis strain ATC-3]
ATGTCACACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAGAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.75

100

0.988