Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MM522_RS15680 Genome accession   NZ_CP093067
Coordinates   3041471..3042862 (-) Length   463 a.a.
NCBI ID   WP_101172232.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATC-3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3036471..3047862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM522_RS15645 (MM522_15645) flgL 3036643..3037539 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  MM522_RS15650 (MM522_15650) flgK 3037550..3039073 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  MM522_RS15655 (MM522_15655) flgN 3039092..3039574 (-) 483 WP_014478127.1 flagellar protein FlgN -
  MM522_RS15660 (MM522_15660) flgM 3039590..3039856 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  MM522_RS15665 (MM522_15665) yvyF 3039937..3040356 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  MM522_RS15670 (MM522_15670) comFC 3040429..3041151 (-) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  MM522_RS15675 (MM522_15675) comFB 3041115..3041411 (-) 297 WP_014478130.1 late competence protein ComFB -
  MM522_RS15680 (MM522_15680) comFA 3041471..3042862 (-) 1392 WP_101172232.1 ATP-dependent helicase ComFA Machinery gene
  MM522_RS15685 (MM522_15685) fakBA 3042968..3043813 (-) 846 WP_003244125.1 DegV family protein -
  MM522_RS15690 (MM522_15690) degU 3043911..3044600 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MM522_RS15695 (MM522_15695) degS 3044683..3045840 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  MM522_RS15700 (MM522_15700) yvyE 3046057..3046710 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52655.85 Da        Isoelectric Point: 10.1764

>NTDB_id=661868 MM522_RS15680 WP_101172232.1 3041471..3042862(-) (comFA) [Bacillus subtilis strain ATC-3]
MNVPVEKNSSFSKELQQRLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGAEISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIKFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=661868 MM522_RS15680 WP_101172232.1 3041471..3042862(-) (comFA) [Bacillus subtilis strain ATC-3]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGAGGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGAAATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCATTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAAAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGGGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.704

100

0.987