Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEC/celB   Type   Machinery gene
Locus tag   SRT_RS07305 Genome accession   NZ_AP014612
Coordinates   1514662..1516896 (-) Length   744 a.a.
NCBI ID   WP_128833604.1    Uniprot ID   -
Organism   Streptococcus troglodytae strain TKU 31     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1440680..1518093 1514662..1516896 within 0


Gene organization within MGE regions


Location: 1440680..1518093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRT_RS06945 (SRT_14260) rpmI 1440749..1440949 (-) 201 WP_002263327.1 50S ribosomal protein L35 -
  SRT_RS06950 infC 1440969..1441513 (-) 545 Protein_1363 translation initiation factor IF-3 -
  SRT_RS06955 (SRT_14290) cmk 1441678..1442360 (-) 683 Protein_1364 (d)CMP kinase -
  SRT_RS06960 (SRT_14300) - 1442371..1442853 (-) 483 WP_128833549.1 SAG1386/EF1546 family surface-associated protein -
  SRT_RS06965 (SRT_14310) - 1442899..1443093 (+) 195 WP_128833550.1 ferredoxin -
  SRT_RS06970 (SRT_14320) - 1443085..1443568 (-) 484 Protein_1367 EbsA family protein -
  SRT_RS06975 (SRT_14340) pepT 1443624..1444845 (-) 1222 Protein_1368 peptidase T -
  SRT_RS06980 (SRT_14350) - 1444938..1445537 (-) 600 WP_128833552.1 DUF6287 domain-containing protein -
  SRT_RS06985 (SRT_14360) atlA 1445558..1448497 (-) 2940 WP_128833553.1 autolysin AtlA -
  SRT_RS06990 (SRT_14370) - 1448743..1449240 (-) 498 WP_128833554.1 YkgJ family cysteine cluster protein -
  SRT_RS07000 (SRT_14380) - 1449801..1450205 (-) 405 WP_128833556.1 SMI1/KNR4 family protein -
  SRT_RS07005 (SRT_14390) - 1450207..1450803 (-) 597 WP_128833557.1 HNH/ENDO VII family nuclease -
  SRT_RS07010 (SRT_14400) - 1450800..1454156 (-) 3357 WP_128833558.1 ATP-binding protein -
  SRT_RS11270 - 1454172..1456727 (-) 2556 Protein_1375 dynamin family protein -
  SRT_RS07020 - 1457028..1457212 (-) 185 Protein_1376 macro domain-containing protein -
  SRT_RS07025 (SRT_14440) - 1457643..1457960 (-) 318 WP_128833559.1 carboxymuconolactone decarboxylase family protein -
  SRT_RS07030 (SRT_14450) - 1457996..1458862 (-) 867 WP_128833560.1 aldo/keto reductase -
  SRT_RS07035 (SRT_14460) nmlR 1458871..1459254 (-) 384 WP_128833561.1 stress response transcriptional regulator NmlR -
  SRT_RS07040 (SRT_14470) gapN 1459928..1461355 (-) 1428 WP_128833562.1 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase -
  SRT_RS07045 (SRT_14480) ptsP 1461582..1463314 (-) 1733 Protein_1381 phosphoenolpyruvate--protein phosphotransferase -
  SRT_RS07050 (SRT_14490) - 1463319..1463582 (-) 264 WP_002262984.1 phosphocarrier protein HPr -
  SRT_RS07055 - 1463748..1464543 (-) 796 Protein_1383 putative ABC transporter permease -
  SRT_RS07060 (SRT_14520) icd 1464961..1466142 (-) 1182 WP_128833563.1 NADP-dependent isocitrate dehydrogenase -
  SRT_RS07065 (SRT_14530) - 1466144..1467262 (-) 1119 WP_128833564.1 citrate synthase -
  SRT_RS07070 (SRT_14540) acnA 1467267..1469933 (-) 2667 WP_128833565.1 aconitate hydratase AcnA -
  SRT_RS07075 (SRT_14550) - 1470187..1470411 (+) 225 WP_002265418.1 redoxin NrdH -
  SRT_RS07080 (SRT_14560) nrdE 1470612..1472771 (+) 2160 WP_128833566.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  SRT_RS07085 (SRT_14570) - 1472822..1473208 (+) 387 WP_128833567.1 nuclear transport factor 2 family protein -
  SRT_RS07090 (SRT_14580) nrdF 1473220..1474179 (+) 960 WP_002268821.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  SRT_RS07095 (SRT_14590) - 1474294..1475436 (-) 1143 WP_128833568.1 acetylornithine transaminase -
  SRT_RS07100 (SRT_14600) argB 1475576..1476313 (-) 738 WP_128833569.1 acetylglutamate kinase -
  SRT_RS07105 (SRT_14610) argJ 1476342..1477535 (-) 1194 WP_128833570.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  SRT_RS07110 (SRT_14620) argC 1477692..1478714 (-) 1023 WP_128833571.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  SRT_RS07115 (SRT_14630) - 1478850..1479539 (-) 690 WP_128833572.1 CPBP family intramembrane glutamic endopeptidase -
  SRT_RS07120 (SRT_14640) - 1479556..1479918 (-) 363 Protein_1396 DUF3169 family protein -
  SRT_RS07125 - 1480019..1481124 (+) 1106 Protein_1397 IS3 family transposase -
  SRT_RS07130 (SRT_14680) - 1481121..1481513 (-) 393 WP_223213934.1 DUF3169 family protein -
  SRT_RS07135 (SRT_14690) - 1481539..1481751 (-) 213 WP_128833574.1 helix-turn-helix transcriptional regulator -
  SRT_RS07140 (SRT_14700) - 1481761..1481961 (-) 201 WP_128833575.1 hypothetical protein -
  SRT_RS07145 (SRT_14710) - 1482375..1483757 (-) 1383 WP_128833576.1 sensor histidine kinase -
  SRT_RS07150 (SRT_14720) - 1483748..1484407 (-) 660 WP_128833577.1 response regulator transcription factor -
  SRT_RS07155 (SRT_14730) - 1484449..1485231 (-) 783 WP_197702785.1 TraX family protein -
  SRT_RS07160 (SRT_14740) - 1485326..1486072 (-) 747 WP_128833579.1 lantibiotic immunity ABC transporter MutG family permease subunit -
  SRT_RS07165 (SRT_14750) - 1486072..1486821 (-) 750 WP_128833580.1 lantibiotic immunity ABC transporter MutE/EpiE family permease subunit -
  SRT_RS07170 (SRT_14760) - 1486823..1487524 (-) 702 WP_161940069.1 lantibiotic protection ABC transporter ATP-binding protein -
  SRT_RS07175 (SRT_14770) - 1487706..1488662 (+) 957 WP_128833582.1 ABC transporter permease -
  SRT_RS07180 (SRT_14780) - 1488656..1489405 (+) 750 WP_128833583.1 ABC transporter ATP-binding protein -
  SRT_RS07185 (SRT_14790) - 1489425..1490453 (+) 1029 WP_128833584.1 ABC transporter substrate-binding protein -
  SRT_RS07190 (SRT_14800) alaS 1490659..1493277 (-) 2619 WP_128833585.1 alanine--tRNA ligase -
  SRT_RS07195 (SRT_14810) - 1493312..1493809 (-) 498 WP_128833586.1 LURP-one-related/scramblase family protein -
  SRT_RS07200 (SRT_14820) prsA 1494048..1495049 (-) 1002 WP_128833587.1 peptidylprolyl isomerase PrsA -
  SRT_RS07205 (SRT_14830) - 1495111..1495818 (-) 708 WP_128833588.1 O-methyltransferase -
  SRT_RS07210 (SRT_14840) - 1495868..1496485 (-) 618 WP_128833589.1 HAD-IA family hydrolase -
  SRT_RS07215 (SRT_14850) - 1496550..1497074 (-) 525 WP_128833590.1 GNAT family N-acetyltransferase -
  SRT_RS07220 (SRT_14860) pepF 1497220..1499019 (-) 1800 WP_128833591.1 oligoendopeptidase F Regulator
  SRT_RS07225 (SRT_14870) - 1499038..1499982 (-) 945 WP_128833592.1 competence protein CoiA -
  SRT_RS07230 (SRT_14880) - 1500290..1501183 (-) 894 WP_128833593.1 alpha/beta hydrolase -
  SRT_RS07235 (SRT_14890) - 1501200..1502168 (-) 969 WP_128833594.1 alcohol dehydrogenase catalytic domain-containing protein -
  SRT_RS07240 (SRT_14900) - 1502296..1503668 (+) 1373 Protein_1420 PLP-dependent aminotransferase family protein -
  SRT_RS11275 - 1503715..1503962 (+) 248 Protein_1421 glutathione S-transferase family protein -
  SRT_RS07250 (SRT_14920) - 1504651..1505352 (-) 702 WP_128833595.1 glucosamine-6-phosphate deaminase -
  SRT_RS07255 (SRT_14930) - 1505485..1506204 (-) 720 WP_128833596.1 VIT1/CCC1 transporter family protein -
  SRT_RS07260 (SRT_14940) queA 1506341..1507369 (+) 1029 WP_128833597.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SRT_RS07265 (SRT_14950) - 1507553..1508779 (-) 1227 WP_128833598.1 acyl-CoA thioesterase/bile acid-CoA:amino acid N-acyltransferase family protein -
  SRT_RS07270 (SRT_14960) - 1508826..1509290 (-) 465 WP_128833599.1 MarR family transcriptional regulator -
  SRT_RS07275 (SRT_14970) - 1509359..1510116 (-) 758 Protein_1427 YhfC family intramembrane metalloprotease -
  SRT_RS11215 - 1510279..1511332 (-) 1054 Protein_1428 serine hydrolase -
  SRT_RS07290 (SRT_15000) sodA 1511885..1512496 (-) 612 WP_128834055.1 superoxide dismutase SodA -
  SRT_RS07295 (SRT_15010) holA 1512642..1513681 (-) 1040 Protein_1430 DNA polymerase III subunit delta -
  SRT_RS07300 (SRT_15020) - 1513849..1514475 (-) 627 WP_128833603.1 DUF805 domain-containing protein -
  SRT_RS07305 (SRT_15030) comEC/celB 1514662..1516896 (-) 2235 WP_128833604.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SRT_RS07310 (SRT_15040) - 1516886..1517566 (-) 681 WP_128833605.1 helix-hairpin-helix domain-containing protein -

Sequence


Protein


Download         Length: 744 a.a.        Molecular weight: 85170.29 Da        Isoelectric Point: 10.0792

>NTDB_id=66180 SRT_RS07305 WP_128833604.1 1514662..1516896(-) (comEC/celB) [Streptococcus troglodytae strain TKU 31]
MLIRFFPIKPIYLAFLTVLLYFVICCFSFLPVGLFVLALVFLVFQYDRKTCIKTLLFLLPFTAFFFYSHQKRQSEYQMVP
KQVQKLTIIPDTLSVNGDSLSFHAKSGHWTYQVFYKLKSETEKHYFEQLWQTAEIQVTADVTEAEEQRNFKGFDYRHYLK
MQGIYRLVNVTDIKTIKLSSKRSWFARLHEWRRRALVSIQTKFPDPMKHYMTGLLFGYLDKSFDEMNAIYSSLGIIHLFA
LSGMQVSFFIGKFRYLGLRLGIRQEYMNAIQLPFSLLYAGLTGFAVSVVRSLIQSNLTHFGFKKQDNFALTLFIMFFLMP
NFLLTTGGVLSFAYAFILTMIDFDALSPLKRSLFQAFSLSLGILPLLMWYFSSFQPLSVLLTALFSFIFDGLMLPFLTLA
YFLSPFVSLACFNPAFRLLERIIVQIHLIFSRPFILGSPALPILLILLCLLALLYDFHQKKRVVLVLSSILTLLFFISKN
PLTNEVTVIDIGQGDSILLRDISGKTILIDVGGKVTFRQADKWRRRISDANAEKTLIPYLKSRGIGKIDQLVLTHTDTDH
MGDMEVVAKAFHVGQVLVSPGSLTKTNFVNKLRRMKVKVHTTKPEETLSIMGSHLQVLYPLKTGDGGNNDSIVLYGRLLG
LNFLFTGDLEKEGEAELLKAYPNLKVDVLKAGHHGSKGSSSPELLAQIEPKIALISAGKNNHYKHPHQETLDRFAQIKSR
IYRTDQEGAIRFKGLKHWQIETVR

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=66180 SRT_RS07305 WP_128833604.1 1514662..1516896(-) (comEC/celB) [Streptococcus troglodytae strain TKU 31]
GTGTTGATTAGATTTTTTCCTATCAAGCCAATCTATTTAGCCTTTTTAACGGTTTTGCTTTATTTTGTTATTTGCTGCTT
TTCTTTTTTGCCAGTTGGCTTATTTGTTTTAGCTTTAGTCTTTCTTGTTTTTCAATATGATAGGAAAACCTGTATCAAAA
CGCTTTTGTTTTTATTGCCTTTTACCGCTTTCTTTTTCTATTCTCATCAAAAAAGGCAAAGTGAGTATCAGATGGTACCC
AAGCAGGTTCAAAAGTTAACTATCATTCCAGATACACTTAGTGTAAATGGCGACAGCTTGAGTTTTCATGCGAAATCAGG
TCATTGGACTTATCAGGTCTTTTATAAATTAAAATCTGAAACAGAGAAACATTATTTTGAGCAATTATGGCAGACAGCAG
AAATTCAAGTGACAGCAGATGTGACAGAAGCAGAAGAGCAGCGTAATTTCAAGGGATTCGATTATAGACACTATTTAAAG
ATGCAGGGAATTTACCGACTTGTTAATGTCACAGACATTAAAACAATTAAACTGAGCTCTAAACGCTCTTGGTTTGCTCG
TTTGCATGAATGGCGACGAAGAGCCTTGGTATCCATTCAAACAAAATTTCCAGACCCCATGAAACACTATATGACTGGCC
TGCTTTTTGGCTATTTAGACAAATCCTTTGATGAAATGAATGCTATTTATTCTAGCTTAGGTATTATTCACCTTTTTGCT
TTGTCAGGTATGCAGGTTAGTTTTTTTATCGGGAAATTTCGTTATTTGGGTTTGCGTTTAGGTATCAGACAGGAATATAT
GAATGCTATTCAGCTGCCCTTTTCTTTGCTTTATGCTGGTTTGACTGGTTTTGCAGTATCTGTTGTGCGCAGTCTGATTC
AAAGTAATCTTACTCATTTTGGTTTTAAAAAGCAGGATAATTTTGCTTTAACTTTATTTATTATGTTTTTTCTGATGCCT
AATTTCTTATTAACAACAGGAGGTGTGCTTAGTTTTGCCTATGCTTTTATTTTGACCATGATTGATTTTGATGCTTTGTC
ACCCTTAAAACGGAGTCTATTTCAAGCCTTTTCTCTTTCTTTAGGAATTTTACCGCTGTTGATGTGGTATTTTAGCAGCT
TTCAGCCCTTATCTGTCCTATTGACTGCCCTCTTTTCTTTCATTTTTGATGGTTTGATGTTACCCTTTTTGACACTTGCC
TATTTTCTGTCGCCTTTTGTATCACTTGCTTGCTTCAATCCAGCTTTTAGATTATTAGAAAGAATAATTGTTCAAATTCA
CTTAATCTTTAGTCGTCCTTTTATTTTGGGCAGTCCGGCTTTGCCCATTCTCTTAATTTTATTGTGCCTTTTAGCCTTAC
TCTATGATTTTCATCAGAAGAAAAGAGTGGTATTAGTACTTAGCAGCATTCTCACCCTGCTATTTTTCATCAGCAAAAAT
CCTTTGACTAATGAAGTAACTGTTATTGATATTGGTCAGGGGGATAGTATTCTTCTTCGAGATATCAGCGGTAAGACTAT
TTTAATTGATGTAGGAGGAAAGGTAACTTTTAGACAGGCTGATAAATGGCGGCGGCGTATCAGTGATGCTAATGCTGAAA
AGACTTTGATTCCCTATCTCAAAAGCAGAGGCATTGGTAAGATTGACCAATTGGTTTTGACTCATACTGATACAGATCAT
ATGGGAGATATGGAAGTGGTGGCAAAGGCCTTTCATGTTGGTCAAGTTTTAGTTAGTCCAGGTAGTTTAACTAAAACAAA
TTTTGTCAATAAATTGAGAAGAATGAAAGTTAAGGTACACACCACTAAGCCAGAGGAGACATTATCCATTATGGGGAGTC
ATTTACAAGTACTTTATCCATTGAAAACAGGTGATGGCGGCAATAATGATTCTATTGTTCTTTATGGGCGCTTGCTAGGT
TTAAATTTTCTCTTCACAGGAGATTTAGAAAAAGAAGGAGAAGCAGAATTGCTAAAGGCTTATCCCAATTTAAAAGTTGA
TGTCTTAAAAGCTGGACACCATGGTTCAAAAGGCTCTTCTTCACCTGAATTATTAGCTCAAATAGAGCCTAAAATTGCTC
TTATTTCGGCAGGAAAGAACAATCATTATAAACATCCCCATCAAGAGACATTGGATAGATTTGCGCAAATAAAAAGTCGG
ATTTATCGGACGGATCAAGAGGGCGCCATTCGTTTTAAGGGTCTTAAGCATTGGCAGATTGAGACTGTACGATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis NCTC 12261

51.078

99.731

0.509

  comEC/celB Streptococcus mitis SK321

50.676

99.462

0.504

  comEC/celB Streptococcus pneumoniae TIGR4

50.336

99.866

0.503

  comEC/celB Streptococcus pneumoniae Rx1

49.664

99.866

0.496

  comEC/celB Streptococcus pneumoniae D39

49.664

99.866

0.496

  comEC/celB Streptococcus pneumoniae R6

49.664

99.866

0.496

  comEC Lactococcus lactis subsp. cremoris KW2

45.067

100

0.454


Multiple sequence alignment