Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   MMZ72_RS26840 Genome accession   NZ_CP093021
Coordinates   5802515..5803579 (-) Length   354 a.a.
NCBI ID   WP_003110888.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H09     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5797515..5808579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ72_RS26815 (MMZ72_26815) aroK 5798047..5798565 (-) 519 WP_003095833.1 shikimate kinase AroK -
  MMZ72_RS26820 (MMZ72_26820) pilQ 5798577..5800721 (-) 2145 WP_024916548.1 type 4a pilus secretin PilQ Machinery gene
  MMZ72_RS26825 (MMZ72_26825) pilP 5800775..5801299 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP -
  MMZ72_RS26830 (MMZ72_26830) pilO 5801296..5801919 (-) 624 WP_024916549.1 type 4a pilus biogenesis protein PilO -
  MMZ72_RS26835 (MMZ72_26835) pilN 5801916..5802515 (-) 600 WP_024916550.1 type 4a pilus biogenesis protein PilN -
  MMZ72_RS26840 (MMZ72_26840) pilM 5802515..5803579 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  MMZ72_RS26845 (MMZ72_26845) - 5803764..5806235 (+) 2472 WP_024916551.1 penicillin-binding protein 1A -
  MMZ72_RS26850 (MMZ72_26850) - 5806331..5807599 (-) 1269 WP_024916552.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37983.48 Da        Isoelectric Point: 4.5405

>NTDB_id=661513 MMZ72_RS26840 WP_003110888.1 5802515..5803579(-) (pilM) [Pseudomonas aeruginosa strain H09]
MLGLIKKKANTLLGIDISSTSVKLLELSRSGGRYKVEAYAVEPLPPNAVVEKNIVELEGVGQALSRVLVKAKTNLKSAVV
AVAGSAVITKTIEMEAGLSEDELENQLKIEADQYIPYPLEEVAIDFEVQGLSARNPERVDVLLAACRKENVEVREAALAL
AGLTAKVVDVEAYALERSYALLSSQLGADTDQLTVAVVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSV
EEAGLAKKQGGLPDDYDSEVLRPFKDAVVQQVSRSLQFFFAAGQFNDVDYIVLAGGTASIQDLDRLIQQKIGTPTLVANP
FADMALNGKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=661513 MMZ72_RS26840 WP_003110888.1 5802515..5803579(-) (pilM) [Pseudomonas aeruginosa strain H09]
GTGCTAGGGCTCATAAAGAAGAAAGCGAACACCTTGCTGGGGATCGACATCAGCTCGACCTCGGTGAAGCTCCTTGAGTT
GAGCCGCTCCGGAGGCCGCTACAAAGTGGAGGCCTATGCCGTCGAGCCGCTTCCGCCGAATGCAGTCGTGGAAAAGAACA
TCGTCGAGCTGGAAGGGGTCGGCCAGGCGTTGTCACGGGTGCTGGTCAAGGCGAAAACCAACCTGAAGTCGGCCGTGGTC
GCCGTCGCCGGTTCGGCGGTGATTACCAAGACCATCGAGATGGAGGCCGGGCTTTCCGAGGATGAACTGGAAAACCAGCT
GAAGATCGAGGCCGACCAGTACATCCCCTATCCACTGGAGGAAGTCGCCATCGACTTCGAGGTCCAGGGGCTTTCCGCGC
GCAATCCCGAGCGCGTGGACGTGCTCCTGGCCGCCTGTCGGAAAGAGAACGTCGAGGTCCGCGAAGCGGCCCTGGCGCTG
GCCGGACTGACCGCCAAGGTGGTCGACGTCGAGGCCTACGCGCTGGAGCGTTCCTATGCGCTGCTGAGCAGCCAGCTGGG
TGCCGACACCGACCAGTTGACCGTGGCTGTAGTGGACATCGGCGCGACCATGACCACCCTGAGCGTCCTCCACAACGGAC
GCACCATCTATACCCGCGAGCAGCTGTTCGGCGGTCGCCAGCTCACCGAGGAGATCCAGCGGCGTTACGGACTCTCGGTG
GAGGAAGCCGGTCTCGCCAAGAAGCAGGGCGGTCTTCCGGATGACTACGACAGCGAAGTTCTGCGTCCGTTCAAGGACGC
CGTGGTGCAGCAGGTTTCCCGTTCGTTGCAGTTCTTCTTCGCCGCCGGGCAGTTCAACGACGTCGACTACATCGTCCTGG
CCGGCGGTACGGCGTCCATCCAGGATCTCGATCGCTTGATCCAGCAGAAGATCGGCACCCCGACCCTGGTCGCCAACCCG
TTCGCCGACATGGCGCTGAACGGCAAGGTGAATGCCGGCGCCCTGGCCAGCGACGCTCCGGCGTTGATGATCGCCTGTGG
CCTGGCGTTGAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

55.899

100

0.562
  comM Acinetobacter nosocomialis M2

55.899

100

0.562
  comM Acinetobacter baylyi ADP1

51.977

100

0.52
  pilM Legionella pneumophila strain ERS1305867

46.61

100

0.466