Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG709_RS20450 Genome accession   NZ_CP108455
Coordinates   4449081..4450490 (-) Length   469 a.a.
NCBI ID   WP_250305430.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01267     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4444081..4455490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG709_RS20425 (OG709_20435) - 4444521..4445072 (-) 552 WP_250305435.1 SigE family RNA polymerase sigma factor -
  OG709_RS20430 (OG709_20440) - 4445243..4446160 (-) 918 WP_266641522.1 A/G-specific adenine glycosylase -
  OG709_RS20435 (OG709_20445) - 4446177..4446785 (-) 609 WP_250305433.1 phosphatase PAP2 family protein -
  OG709_RS20440 (OG709_20450) - 4446960..4447805 (+) 846 WP_329167324.1 hypothetical protein -
  OG709_RS20445 (OG709_20455) disA 4447912..4449036 (-) 1125 WP_250305431.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG709_RS20450 (OG709_20460) radA/sms 4449081..4450490 (-) 1410 WP_250305430.1 DNA repair protein RadA Machinery gene
  OG709_RS20455 (OG709_20465) - 4450652..4452355 (+) 1704 WP_250305429.1 hypothetical protein -
  OG709_RS20460 (OG709_20470) - 4452409..4453215 (-) 807 WP_250305428.1 hypothetical protein -
  OG709_RS20465 (OG709_20475) - 4453293..4454225 (+) 933 WP_250305427.1 Ppx/GppA phosphatase family protein -
  OG709_RS20470 (OG709_20480) - 4454288..4455106 (+) 819 WP_250305426.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49394.64 Da        Isoelectric Point: 8.0122

>NTDB_id=660924 OG709_RS20450 WP_250305430.1 4449081..4450490(-) (radA/sms) [Streptomyces sp. NBC_01267]
MATRAKTKDRPSYRCTECGWTTAKWLGRCPECQTWGTVEEFGGAPAVRTTAAGRVSTAAVPIGQVDSRTATARSTGVAEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRLRADRIHAINDHLYLAAETDLSAVL
GHLDAVKPSLLVLDSVQTVASPELDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDTQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYTATVGGVKLTEPAADLAVALALASAASDVPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKVPAGMKVIEVADMGDALRVLPRSPRARAPQEEVVRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=660924 OG709_RS20450 WP_250305430.1 4449081..4450490(-) (radA/sms) [Streptomyces sp. NBC_01267]
ATGGCCACCCGTGCAAAGACCAAAGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGACGACCGCCAAGTGGCTCGG
CCGCTGCCCCGAGTGCCAGACCTGGGGGACGGTCGAGGAGTTCGGCGGCGCGCCCGCCGTGCGTACGACGGCGGCGGGCC
GGGTCAGCACCGCCGCGGTCCCCATCGGCCAGGTCGACAGCCGGACGGCGACCGCCCGTTCCACCGGTGTCGCCGAGCTG
GACCGGGTGCTCGGCGGCGGGCTGGTGCCCGGTGCCGTGGTGCTGCTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACGCT
GCTGCTCGATGTCGCGGCGAAGGCGGCCAGTGACGACCACCGCACGCTCTACGTGACCGCCGAGGAGTCCGCCAGCCAGG
TCAGGCTGCGCGCCGACCGGATCCACGCGATCAACGACCATCTGTACCTGGCCGCCGAGACCGATCTCTCCGCGGTGCTC
GGCCACCTCGATGCCGTCAAGCCGTCCCTGCTGGTGCTGGACTCCGTACAGACGGTGGCCTCGCCCGAGCTGGACGGGGC
GCCCGGCGGTATGGCGCAGGTGCGTGAGGTGGCGGGGGCGCTGATCCGCGCCTCCAAGGAGCGCGGGATGTCCACGCTGC
TGGTCGGCCACGTGACGAAGGACGGCGCCATCGCGGGCCCGCGGCTCCTGGAACACCTGGTGGACGTCGTGCTCTCCTTC
GAGGGCGACCGGCACGCCCGCCTCCGGCTGGTCCGCGGTGTCAAGAACCGGTACGGCGCGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCGAGCGGGCTGTTCCTGACACGCCGTGACGAGCCCGTCCCCG
GCACCTGCCTGACGGTCACCCTGGAGGGCAAGCGCCCCCTGGTCGCCGAGGTGCAGGCGCTCACCGTCGACACCCAGATC
CCTTCACCCCGGCGCACCACCTCGGGCCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTGCTCGAACAGCGCGGCAG
GATCAGCGCGCTCGGCAAGCGCGACATCTACACGGCGACGGTCGGCGGCGTGAAGCTCACCGAACCGGCCGCCGACCTGG
CCGTCGCGCTGGCCCTGGCCTCCGCGGCCAGCGATGTCCCGCTGCCGAAGAACCTGGTCGCGATCGGCGAAGTCGGCCTG
GCAGGCGAGGTCCGAAGGGTCACCGGCGTCCAGCGCAGGCTCGCCGAGGCGCACCGTCTCGGCTTCACCCATGCCCTGGT
CCCGGCCGACCCGGGGAAGGTCCCGGCGGGCATGAAGGTGATCGAAGTGGCCGACATGGGAGACGCGCTCCGGGTCCTCC
CGCGCAGTCCGAGGGCCCGCGCGCCCCAGGAGGAGGTAGTGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(81-222)

Subunit ChlI of Mg-chelatase (ChlI)

(370-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(13-40)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.736

97.015

0.424
  radA Streptococcus mitis SK321

42.637

97.015

0.414
  radA Streptococcus mitis NCTC 12261

42.637

97.015

0.414
  radA Streptococcus pneumoniae TIGR4

42.699

96.375

0.412
  radA Streptococcus pneumoniae R6

42.699

96.375

0.412
  radA Streptococcus pneumoniae Rx1

42.699

96.375

0.412
  radA Streptococcus pneumoniae D39

42.699

96.375

0.412