Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | M3B_RS01665 | Genome accession | NZ_AP014596 |
| Coordinates | 313716..314207 (+) | Length | 163 a.a. |
| NCBI ID | WP_002983122.1 | Uniprot ID | A0A9X8XIP7 |
| Organism | Streptococcus pyogenes strain M3-b | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 308716..319207
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M3B_RS01635 (M3B_0337) | - | 309905..310405 (+) | 501 | WP_011054969.1 | phosphatase PAP2 family protein | - |
| M3B_RS01640 (M3B_0338) | trxA | 310468..310800 (+) | 333 | WP_001932060.1 | thioredoxin | - |
| M3B_RS01645 (M3B_0339) | - | 310852..311439 (-) | 588 | WP_011054968.1 | helix-turn-helix domain-containing protein | - |
| M3B_RS01650 (M3B_0340) | mutY | 311616..312770 (-) | 1155 | WP_002988276.1 | A/G-specific adenine glycosylase | - |
| M3B_RS01655 | - | 312938..313231 (+) | 294 | WP_002983113.1 | hypothetical protein | - |
| M3B_RS01660 (M3B_0342) | rpsF | 313404..313694 (+) | 291 | WP_002983117.1 | 30S ribosomal protein S6 | - |
| M3B_RS01665 (M3B_0343) | ssb | 313716..314207 (+) | 492 | WP_002983122.1 | single-stranded DNA-binding protein | Machinery gene |
| M3B_RS01670 (M3B_0344) | rpsR | 314372..314611 (+) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| M3B_RS01675 (M3B_0345) | - | 314744..315400 (-) | 657 | WP_002983144.1 | DUF1129 domain-containing protein | - |
| M3B_RS01680 (M3B_0346) | - | 315532..316476 (-) | 945 | WP_002983147.1 | magnesium transporter CorA family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17981.76 Da Isoelectric Point: 4.8894
>NTDB_id=66090 M3B_RS01665 WP_002983122.1 313716..314207(+) (ssb) [Streptococcus pyogenes strain M3-b]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=66090 M3B_RS01665 WP_002983122.1 313716..314207(+) (ssb) [Streptococcus pyogenes strain M3-b]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.195 |
100 |
0.632 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
65.031 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
66.871 |
0.362 |