Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MK860_RS16750 Genome accession   NZ_CP092829
Coordinates   3264524..3265213 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain MS32     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3259524..3270213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK860_RS16715 (MK860_16650) - 3259602..3260084 (-) 483 WP_034660146.1 flagellar protein FlgN -
  MK860_RS16720 (MK860_16655) flgM 3260103..3260366 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  MK860_RS16725 (MK860_16660) - 3260446..3260865 (-) 420 WP_034660147.1 TIGR03826 family flagellar region protein -
  MK860_RS16730 (MK860_16665) comFC 3260922..3261608 (-) 687 WP_185847347.1 ComF family protein Machinery gene
  MK860_RS16735 (MK860_16670) - 3261605..3261898 (-) 294 WP_278176766.1 late competence development ComFB family protein -
  MK860_RS16740 (MK860_16675) comFA 3261965..3263344 (-) 1380 WP_278176769.1 DEAD/DEAH box helicase Machinery gene
  MK860_RS16745 (MK860_16680) - 3263464..3264306 (-) 843 WP_113768803.1 DegV family protein -
  MK860_RS16750 (MK860_16685) degU 3264524..3265213 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  MK860_RS16755 (MK860_16690) degS 3265278..3266453 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  MK860_RS16760 (MK860_16695) - 3266675..3267343 (+) 669 WP_003212936.1 YigZ family protein -
  MK860_RS16765 (MK860_16700) - 3267328..3268416 (+) 1089 WP_278176781.1 LCP family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=660619 MK860_RS16750 WP_008348273.1 3264524..3265213(-) (degU) [Bacillus pumilus strain MS32]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=660619 MK860_RS16750 WP_008348273.1 3264524..3265213(-) (degU) [Bacillus pumilus strain MS32]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGAGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTGAAAACAGGAGCAAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTTGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCACAGCATGAAGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACGAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGATCGTA
CACAAGCTGTTGTTGTAGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996