Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MKK04_RS02365 Genome accession   NZ_CP092827
Coordinates   527191..527733 (+) Length   180 a.a.
NCBI ID   WP_063911040.1    Uniprot ID   -
Organism   Pseudomonas sp. LS.1a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 522191..532733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKK04_RS02350 (MKK04_02350) bfr 522241..522705 (+) 465 WP_003257116.1 bacterioferritin -
  MKK04_RS02355 (MKK04_02355) uvrA 522823..525657 (-) 2835 WP_207832723.1 excinuclease ABC subunit UvrA -
  MKK04_RS02360 (MKK04_02360) - 525787..527181 (+) 1395 WP_063911039.1 MFS transporter -
  MKK04_RS02365 (MKK04_02365) ssb 527191..527733 (+) 543 WP_063911040.1 single-stranded DNA-binding protein Machinery gene
  MKK04_RS02370 (MKK04_02370) - 527900..528769 (+) 870 WP_207832725.1 EamA family transporter -
  MKK04_RS02375 (MKK04_02375) - 528963..530345 (-) 1383 WP_207832727.1 PLP-dependent aminotransferase family protein -
  MKK04_RS02380 (MKK04_02380) - 530544..531329 (+) 786 WP_207832849.1 TSUP family transporter -
  MKK04_RS02385 (MKK04_02385) - 531351..532112 (+) 762 WP_207832729.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19900.02 Da        Isoelectric Point: 5.9286

>NTDB_id=660520 MKK04_RS02365 WP_063911040.1 527191..527733(+) (ssb) [Pseudomonas sp. LS.1a]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQPQQYNQAPRQQAPRPQQAPQRPAP
QQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=660520 MKK04_RS02365 WP_063911040.1 527191..527733(+) (ssb) [Pseudomonas sp. LS.1a]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGCCGTCCGCAGGGCCAGCAGCAGGGCGGTGACCCGTACAACCAGGGTGGCGGCAACTACGGTG
GCGGCCAGCCGCAACAGTACAACCAGGCTCCGCGCCAGCAGGCCCCGCGCCCGCAACAGGCTCCTCAGCGCCCGGCACCG
CAGCAGCCAGCCCCGCAGCCAGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.452

100

0.583
  ssb Neisseria meningitidis MC58

49.18

100

0.5
  ssb Neisseria gonorrhoeae MS11

49.18

100

0.5
  ssb Glaesserella parasuis strain SC1401

47.368

100

0.5