Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MK848_RS13300 Genome accession   NZ_CP092824
Coordinates   2608708..2609226 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain S1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2603708..2614226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK848_RS13270 (MK848_13250) yyaJ 2604212..2605567 (+) 1356 WP_029318525.1 MFS transporter -
  MK848_RS13275 (MK848_13255) maa 2605601..2606155 (-) 555 WP_003226849.1 sugar O-acetyltransferase -
  MK848_RS13280 (MK848_13260) yyaH 2606173..2606553 (-) 381 WP_048654831.1 VOC family protein -
  MK848_RS13285 (MK848_13265) ccpB 2606609..2607544 (-) 936 WP_048654830.1 transcriptional regulator CcpB -
  MK848_RS13290 (MK848_13270) xth 2607603..2608361 (-) 759 WP_029726087.1 exodeoxyribonuclease III -
  MK848_RS13295 (MK848_13275) rpsR 2608425..2608664 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  MK848_RS13300 (MK848_13280) ssbA 2608708..2609226 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  MK848_RS13305 (MK848_13285) rpsF 2609267..2609554 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  MK848_RS13310 (MK848_13290) ychF 2609665..2610765 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  MK848_RS13315 (MK848_13295) yyaE 2610892..2612895 (-) 2004 WP_241495671.1 molybdopterin-dependent oxidoreductase -
  MK848_RS13320 (MK848_13300) yyzM 2612946..2613152 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=660445 MK848_RS13300 WP_003219228.1 2608708..2609226(-) (ssbA) [Bacillus subtilis strain S1]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=660445 MK848_RS13300 WP_003219228.1 2608708..2609226(-) (ssbA) [Bacillus subtilis strain S1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378