Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MK848_RS10365 Genome accession   NZ_CP092824
Coordinates   2028931..2029620 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain S1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2023931..2034620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK848_RS10330 (MK848_10325) flgN 2024112..2024594 (-) 483 WP_014478127.1 flagellar protein FlgN -
  MK848_RS10335 (MK848_10330) flgM 2024610..2024876 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  MK848_RS10340 (MK848_10335) yvyF 2024957..2025376 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  MK848_RS10345 (MK848_10340) comFC 2025449..2026171 (-) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  MK848_RS10350 (MK848_10345) comFB 2026135..2026431 (-) 297 WP_014478130.1 late competence protein ComFB -
  MK848_RS10355 (MK848_10350) comFA 2026491..2027882 (-) 1392 WP_101172232.1 ATP-dependent helicase ComFA Machinery gene
  MK848_RS10360 (MK848_10355) fakBA 2027988..2028833 (-) 846 WP_003244125.1 DegV family protein -
  MK848_RS10365 (MK848_10360) degU 2028931..2029620 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MK848_RS10370 (MK848_10365) degS 2029703..2030860 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  MK848_RS10375 (MK848_10370) yvyE 2031077..2031730 (+) 654 WP_003227979.1 YigZ family protein -
  MK848_RS10380 (MK848_10375) tagV 2031730..2032905 (+) 1176 WP_029318786.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  MK848_RS10385 (MK848_10380) tagO 2032978..2034054 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=660436 MK848_RS10365 WP_003219701.1 2028931..2029620(-) (degU) [Bacillus subtilis strain S1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=660436 MK848_RS10365 WP_003219701.1 2028931..2029620(-) (degU) [Bacillus subtilis strain S1]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1