Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG194_RS31130 Genome accession   NZ_CP108427
Coordinates   6866259..6866939 (+) Length   226 a.a.
NCBI ID   WP_327404104.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01288     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6861259..6871939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG194_RS31100 (OG194_31080) - 6861681..6862787 (-) 1107 WP_327404102.1 acyltransferase family protein -
  OG194_RS31105 (OG194_31085) - 6863091..6863285 (+) 195 WP_026151384.1 hypothetical protein -
  OG194_RS31120 (OG194_31100) tig 6863875..6865266 (+) 1392 WP_327404103.1 trigger factor -
  OG194_RS31125 (OG194_31105) clpP 6865606..6866208 (+) 603 WP_327407260.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG194_RS31130 (OG194_31110) clpP 6866259..6866939 (+) 681 WP_327404104.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG194_RS31135 (OG194_31115) clpX 6867100..6868386 (+) 1287 WP_026151385.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG194_RS31140 (OG194_31120) - 6868475..6869488 (-) 1014 WP_327404105.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25023.38 Da        Isoelectric Point: 4.6593

>NTDB_id=660435 OG194_RS31130 WP_327404104.1 6866259..6866939(+) (clpP) [Streptomyces sp. NBC_01288]
MNDFPGNGLYEHARAEYTGPAAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDLLAKHSKTPIEKIREDIERDKILTAEDALSYGLIDQIISTRKMNNADVH

Nucleotide


Download         Length: 681 bp        

>NTDB_id=660435 OG194_RS31130 WP_327404104.1 6866259..6866939(+) (clpP) [Streptomyces sp. NBC_01288]
GTGAACGACTTCCCCGGCAACGGCCTGTACGAGCACGCACGCGCCGAATACACGGGTCCCGCCGCCGAGTCCCGTTACGT
GATCCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGTGTCCAGATCGACGACGCGTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCG
GACCGCGACATCTCGATCTACATCAACAGCCCTGGTGGCTCTTTCACGGCGCTGACCGCGATCTACGACACGATGCAGTT
TGTGAAGCCGGATGTCCAGACGGTCTGCATGGGCCAGGCCGCGTCCGCCGCCGCCGTCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCGCTGCCGAACGCGCGCGTGCTGATCCACCAGCCGTACAGCGAGACGGGTCGGGGCCAGGTCTCCGAC
CTCGAAATCGCTGCGAACGAGATCCTCCGGATGCGTGCGCAGCTGGAGGACCTGCTGGCCAAGCACTCGAAGACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTGTCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCCGACGTCCACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

84.071

0.442
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.064

83.186

0.425
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Streptococcus pyogenes JRS4

45.641

86.283

0.394
  clpP Streptococcus pyogenes MGAS315

45.641

86.283

0.394
  clpP Streptococcus pneumoniae R6

45.408

86.726

0.394
  clpP Streptococcus pneumoniae TIGR4

45.408

86.726

0.394
  clpP Streptococcus pneumoniae Rx1

45.408

86.726

0.394
  clpP Streptococcus pneumoniae D39

45.408

86.726

0.394
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

86.726

0.385
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

86.726

0.376