Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG194_RS32200 Genome accession   NZ_CP108427
Coordinates   7104843..7106771 (-) Length   642 a.a.
NCBI ID   WP_327404284.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01288     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7099843..7111771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG194_RS32185 (OG194_32165) - 7100075..7101340 (+) 1266 WP_327404281.1 FAD-dependent oxidoreductase -
  OG194_RS32190 (OG194_32170) dnaG 7101388..7103292 (+) 1905 WP_327404282.1 DNA primase -
  OG194_RS32195 (OG194_32175) - 7103374..7104684 (+) 1311 WP_327404283.1 sigma-70 family RNA polymerase sigma factor -
  OG194_RS32200 (OG194_32180) rcrQ 7104843..7106771 (-) 1929 WP_327404284.1 ABC transporter ATP-binding protein Regulator
  OG194_RS32205 (OG194_32185) rcrP 7106771..7108504 (-) 1734 WP_327404285.1 ABC transporter ATP-binding protein Regulator
  OG194_RS32210 (OG194_32190) - 7108668..7110125 (-) 1458 WP_327404286.1 FGGY family carbohydrate kinase -
  OG194_RS32215 (OG194_32195) - 7110177..7110482 (-) 306 WP_020684218.1 hypothetical protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69644.23 Da        Isoelectric Point: 6.5172

>NTDB_id=660437 OG194_RS32200 WP_327404284.1 7104843..7106771(-) (rcrQ) [Streptomyces sp. NBC_01288]
MAGPMGRMMAGTGPDARSMDFKESGKRLIGQFRPERLTIGLLLVCVVISVGLNVVGPKILGNATDLVFAGIIGRQMPAGT
TKAQALQAMRDRGQGSVADMLKSTDFTPGKGIDFTSVGHVLLLALGTFLVAGLLMAVATRMVNRAVNRTMFRLRESVQTK
MSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFWVSWLLALVALVTVPLSFLVATRIGK
RSQPHFVQQWRSTGKLNAHVEEMYTGHTLVKVFGRQDESAQLFAEQNDALYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFVQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQKPDPMPSERPEELRGLVALE
HVSFRYDPDKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIARMSRDELRSGIGMVLQDT
WLFGGSIADNIAYGSSREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPTILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGGHAQLLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=660437 OG194_RS32200 WP_327404284.1 7104843..7106771(-) (rcrQ) [Streptomyces sp. NBC_01288]
ATGGCCGGGCCCATGGGGCGGATGATGGCCGGGACGGGCCCCGACGCCCGTTCGATGGACTTCAAGGAGTCCGGCAAGCG
GCTGATCGGCCAGTTCAGGCCGGAGCGGCTGACCATCGGCCTGCTGCTGGTGTGTGTGGTGATCAGTGTCGGGCTGAACG
TGGTGGGGCCGAAGATCCTCGGCAACGCCACCGACCTGGTCTTCGCGGGCATCATCGGGCGGCAGATGCCGGCCGGGACG
ACCAAGGCGCAGGCCCTCCAGGCGATGCGCGACCGGGGCCAGGGTTCGGTCGCGGACATGCTCAAGAGCACGGACTTCAC
GCCGGGCAAGGGCATCGACTTCACCTCGGTGGGTCATGTGCTGCTGCTCGCGCTGGGCACGTTCCTGGTGGCCGGGCTGC
TGATGGCGGTGGCGACCCGGATGGTCAACCGGGCGGTCAACCGGACCATGTTCCGGCTGCGCGAGAGCGTGCAGACGAAG
ATGTCGCGCCTCCCCCTGTCGTACTTCGACAAGCGCCAGCGCGGTGAGGTCCTCTCCCGCGCGACCAACGACATCGACAA
CATCGGCCAGACCCTCCAGCAGTCGATGGGCCAGCTCATCAACTCGCTACTGACGATCATCGGCGTCCTCGCGATGATGT
TCTGGGTGTCGTGGCTGCTCGCCCTGGTGGCGCTGGTGACCGTGCCGCTGTCGTTCCTCGTCGCCACGCGCATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCGACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTCTTCGGCCGCCAGGACGAGTCGGCGCAGCTGTTCGCCGAGCAGAACGACGCACTCTACGAGGCGG
GCTTCAAGGCGCAGTTCAACAGCGGTGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTCAACTACGTGCTGGTGGCG
GTGGTCGGCGGCCTGCGGGTCGCGTCCGGCTCGCTCTCGATCGGTGATGTGCAGGCGTTCGTCCAGTACTCGCGCCAGTT
CTCCATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTCCAGTCCGGCGTCGCCTCCGCGGAACGGATCTTCGAAC
TCCTCGACGCCGAGGAGCAGAAGCCCGACCCGATGCCGAGCGAACGCCCCGAGGAACTCCGCGGCCTGGTCGCCCTGGAA
CACGTCTCCTTCCGCTACGACCCCGACAAGCCGCTCATCGAGGACCTCTCGCTGACGGTGGAACCGGGCCACACGGTCGC
GATCGTCGGCCCGACCGGCGCCGGCAAGACCACCCTCGTCAACCTCCTCATGCGGTTCTACGAGGTCTCCGGCGGGCGCA
TCACCCTCGACGGCGTCGACATCGCGCGGATGTCCCGGGACGAACTCCGGTCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCTCCATCGCGGACAACATCGCGTACGGGTCCTCTCGCGAGGTCACCCGGGGCGAGATCGAGGAGGC
GGCGCGGGCGGCGCACGCCGACCGGTTCGTCCGTACGCTGCCCGACGGCTACGACACGGTCATCGACGACGAGGGTACGG
GCGTCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGACGATCCTTGTCCTCGACGAG
GCGACGTCTTCGGTCGACACCCGTACGGAGGTGTTGATCCAGAAGGCGATGGCCAAACTCGCCCATGGCCGCACGTCGTT
CGTGATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACACGATCCTGGTCATGGAGAACGGCTCGATCGTCGAACAGG
GCGGGCACGCGCAGCTGTTGGCGGCGGACGGGGCGTATGCGCGGCTGTACAAGGCACAGTTCGCGCAGGCGGTTGCCGAG
GTGGACTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(41-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.291

96.262

0.388