Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   MK848_RS10825 Genome accession   NZ_CP092824
Coordinates   2132119..2132460 (-) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis strain S1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2127119..2137460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK848_RS10810 (MK848_10805) hepAB 2127362..2130130 (+) 2769 WP_129010254.1 DEAD/DEAH box helicase -
  MK848_RS10815 (MK848_10810) ywpJ 2130256..2131113 (-) 858 WP_129010255.1 phosphatase YwpJ -
  MK848_RS10820 (MK848_10815) glcR 2131119..2131895 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  MK848_RS10825 (MK848_10820) ssbB 2132119..2132460 (-) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  MK848_RS10830 (MK848_10825) ywpG 2132537..2132920 (-) 384 WP_015714843.1 DynA interaction protein YwpG -
  MK848_RS10835 (MK848_10830) ywpF 2133095..2133505 (+) 411 WP_014481144.1 YwpF-like family protein -
  MK848_RS10840 (MK848_10835) - 2133645..2134037 (-) 393 Protein_2134 class A sortase -
  MK848_RS10845 - 2134099..2134251 (-) 153 Protein_2135 prealbumin-like fold domain-containing protein -
  MK848_RS10850 (MK848_10840) ywpD 2134285..2135121 (+) 837 WP_241495724.1 sensor histidine kinase -
  MK848_RS10855 (MK848_10845) mscL 2135152..2135547 (-) 396 WP_101172332.1 large conductance mechanosensitive channel protein MscL -
  MK848_RS10860 (MK848_10850) fabZ 2135620..2136045 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MK848_RS10865 (MK848_10855) rapD 2136237..2137301 (+) 1065 WP_014481149.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=660438 MK848_RS10825 WP_003227798.1 2132119..2132460(-) (ssbB) [Bacillus subtilis strain S1]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=660438 MK848_RS10825 WP_003227798.1 2132119..2132460(-) (ssbB) [Bacillus subtilis strain S1]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389