Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG194_RS32205 Genome accession   NZ_CP108427
Coordinates   7106771..7108504 (-) Length   577 a.a.
NCBI ID   WP_327404285.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01288     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7101771..7113504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG194_RS32195 (OG194_32175) - 7103374..7104684 (+) 1311 WP_327404283.1 sigma-70 family RNA polymerase sigma factor -
  OG194_RS32200 (OG194_32180) rcrQ 7104843..7106771 (-) 1929 WP_327404284.1 ABC transporter ATP-binding protein Regulator
  OG194_RS32205 (OG194_32185) rcrP 7106771..7108504 (-) 1734 WP_327404285.1 ABC transporter ATP-binding protein Regulator
  OG194_RS32210 (OG194_32190) - 7108668..7110125 (-) 1458 WP_327404286.1 FGGY family carbohydrate kinase -
  OG194_RS32215 (OG194_32195) - 7110177..7110482 (-) 306 WP_020684218.1 hypothetical protein -
  OG194_RS32235 (OG194_32215) - 7111146..7112174 (-) 1029 WP_327404287.1 SDR family oxidoreductase -
  OG194_RS32240 (OG194_32220) - 7112219..7113478 (-) 1260 WP_327404288.1 beta-ketoacyl-[acyl-carrier-protein] synthase family protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62703.96 Da        Isoelectric Point: 5.7461

>NTDB_id=660438 OG194_RS32205 WP_327404285.1 7106771..7108504(-) (rcrP) [Streptomyces sp. NBC_01288]
MLIRLLRTYLRPYRKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLVQVVCNTGAVYYGA
RTAAAVGRDIRGAIFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLTLMTFTLLVSAPIMCVGGIILALGLDVPLSGV
LIAVVPTLTICVTLIVRRLRPLFRSMQVRLDAVNRVLREQITGNRVIRAFVRDEYEKDRFRKANSDLTEMQLKTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRIASGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLDTESSVVP
PVAPVFELRRHGHLEVRGVGFCYPGAEEPVLKSIDLVARPGETTAVIGSTGSGKSTLLSLVPRLVDATDGEVLVDGVDVS
TIDPVLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSQETAEATVVIVAQRVATIRDADRIVVLDEGRVVGVGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=660438 OG194_RS32205 WP_327404285.1 7106771..7108504(-) (rcrP) [Streptomyces sp. NBC_01288]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAGGAAACCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACCCTGAACGCGCACATCATCGACAACGGTGTGGTGAAGGGGGACACCGGTTACA
TCCTGTCGTTCGGCGCCCTGATGATCGGGATCTCGCTGGTCCAGGTCGTGTGCAACACGGGTGCCGTCTACTACGGCGCG
CGCACCGCGGCGGCCGTCGGCCGGGACATCCGGGGTGCCATCTTCGACCGGGTGCAGTCGTTCTCGGCCCGCGAGGTCGG
CCAGTTCGGCGCGCCCTCGCTGATCACCCGGACGACCAATGACGTCCAGCAGGTCCAGATGCTGACCCTGATGACGTTCA
CCCTGCTCGTGTCGGCGCCGATCATGTGCGTCGGCGGGATCATCCTGGCGCTCGGTCTGGACGTGCCGCTGTCCGGCGTG
CTGATCGCGGTGGTGCCGACGCTCACCATCTGCGTGACGCTGATCGTGCGCCGGCTGCGGCCGCTGTTCCGGTCGATGCA
GGTGCGCCTCGACGCGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGGGACG
AGTACGAGAAGGACCGGTTCCGCAAGGCCAACAGCGATCTCACCGAGATGCAGCTGAAGACCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCGTCGATCGCCGTCGTGTGGTTCGGCGCGCACCGGATCGCGAGTGG
CGGGATGCAGATCGGTGATCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCGAGGAGGTCCTCGACACGGAGAGCAGTGTCGTACCC
CCGGTGGCCCCCGTCTTCGAGCTGCGCCGGCACGGGCATCTGGAGGTCCGCGGGGTCGGCTTCTGTTACCCGGGCGCCGA
GGAACCCGTACTGAAGTCCATCGACCTGGTGGCCCGCCCGGGCGAGACGACGGCCGTGATCGGCTCGACCGGCAGCGGAA
AGTCCACCCTTCTGAGTCTGGTCCCGCGCCTGGTTGACGCGACCGACGGCGAGGTCCTCGTCGACGGGGTCGACGTCTCG
ACCATCGACCCGGTCCTGCTCGCCAAGACGGTCGGCCTGGTCCCGCAGAAGCCGTACCTCTTCGCGGGCACGGTCGCGAC
CAACCTTCGCTACGGCAATCCCGACGCGACCGACGAGGAGTTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TCGAGGGGCTGGAGAACGGACTGGACTCCCCCATCGCGCAGGGCGGCACGAACGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCGCGGACACTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCGCTCTCGCAGGAGACCGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGGCGACGATCA
GGGACGCGGACCGGATCGTCGTACTCGACGAGGGACGGGTCGTGGGGGTGGGGCGCCATCACGAGTTGATGGCGGACAAC
GAGACGTATCGGGAGATCGTGCTCTCCCAGTTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.415

100

0.397