Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MK848_RS10345 Genome accession   NZ_CP092824
Coordinates   2025449..2026171 (-) Length   240 a.a.
NCBI ID   WP_033884179.1    Uniprot ID   -
Organism   Bacillus subtilis strain S1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2020449..2031171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK848_RS10310 (MK848_10305) fliW 2020589..2021020 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  MK848_RS10315 (MK848_10310) yviE 2021041..2021616 (-) 576 WP_015384781.1 DUF6470 family protein -
  MK848_RS10320 (MK848_10315) flgL 2021663..2022559 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  MK848_RS10325 (MK848_10320) flgK 2022570..2024093 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  MK848_RS10330 (MK848_10325) flgN 2024112..2024594 (-) 483 WP_014478127.1 flagellar protein FlgN -
  MK848_RS10335 (MK848_10330) flgM 2024610..2024876 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  MK848_RS10340 (MK848_10335) yvyF 2024957..2025376 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  MK848_RS10345 (MK848_10340) comFC 2025449..2026171 (-) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  MK848_RS10350 (MK848_10345) comFB 2026135..2026431 (-) 297 WP_014478130.1 late competence protein ComFB -
  MK848_RS10355 (MK848_10350) comFA 2026491..2027882 (-) 1392 WP_101172232.1 ATP-dependent helicase ComFA Machinery gene
  MK848_RS10360 (MK848_10355) fakBA 2027988..2028833 (-) 846 WP_003244125.1 DegV family protein -
  MK848_RS10365 (MK848_10360) degU 2028931..2029620 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MK848_RS10370 (MK848_10365) degS 2029703..2030860 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27544.83 Da        Isoelectric Point: 9.3157

>NTDB_id=660434 MK848_RS10345 WP_033884179.1 2025449..2026171(-) (comFC) [Bacillus subtilis strain S1]
MSHEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=660434 MK848_RS10345 WP_033884179.1 2025449..2026171(-) (comFC) [Bacillus subtilis strain S1]
ATGTCACACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAGAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.75

100

0.988