Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG194_RS31125 Genome accession   NZ_CP108427
Coordinates   6865606..6866208 (+) Length   200 a.a.
NCBI ID   WP_327407260.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01288     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6860606..6871208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG194_RS31100 (OG194_31080) - 6861681..6862787 (-) 1107 WP_327404102.1 acyltransferase family protein -
  OG194_RS31105 (OG194_31085) - 6863091..6863285 (+) 195 WP_026151384.1 hypothetical protein -
  OG194_RS31120 (OG194_31100) tig 6863875..6865266 (+) 1392 WP_327404103.1 trigger factor -
  OG194_RS31125 (OG194_31105) clpP 6865606..6866208 (+) 603 WP_327407260.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG194_RS31130 (OG194_31110) clpP 6866259..6866939 (+) 681 WP_327404104.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG194_RS31135 (OG194_31115) clpX 6867100..6868386 (+) 1287 WP_026151385.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG194_RS31140 (OG194_31120) - 6868475..6869488 (-) 1014 WP_327404105.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21139.95 Da        Isoelectric Point: 4.6663

>NTDB_id=660434 OG194_RS31125 WP_327407260.1 6865606..6866208(+) (clpP) [Streptomyces sp. NBC_01288]
MPTAAGEPSIGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQFI
KNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKRRMAELTSQHTGQSIEQ
VTRDSDRDRWFDANEAKDYGLIDDVIPTAAGMPGGGGTGA

Nucleotide


Download         Length: 603 bp        

>NTDB_id=660434 OG194_RS31125 WP_327407260.1 6865606..6866208(+) (clpP) [Streptomyces sp. NBC_01288]
ATGCCTACAGCCGCCGGCGAGCCCTCTATCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGTGAGCGGATCAT
CTTTCTCGGCCAGGCGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGCTCCTCCTCCTTGCCGCCGACCCCGACA
AGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTTCATC
AAGAACGACGTGGTGACCATCGCCATGGGCCTCGCCGCCTCCATGGGCCAGTTCCTTCTCAGCGCGGGTACCCCGGGCAA
GCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGTCTGGCCGGTTCGGCCTCCGACATCAAGA
TCCACGCGGAGCGGCTGCTGCACACCAAGCGACGCATGGCCGAGCTCACGTCCCAGCACACGGGCCAGAGCATCGAGCAG
GTCACCCGCGACTCGGACCGCGACCGTTGGTTCGACGCGAACGAGGCCAAGGACTACGGCCTCATCGACGACGTGATTCC
CACGGCCGCCGGTATGCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.08

93.5

0.515
  clpP Lactococcus lactis subsp. cremoris KW2

51.323

94.5

0.485
  clpP Streptococcus mutans UA159

51.323

94.5

0.485
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.794

94.5

0.48
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.526

95

0.48
  clpP Streptococcus pyogenes MGAS315

49.206

94.5

0.465
  clpP Streptococcus pyogenes JRS4

49.206

94.5

0.465
  clpP Streptococcus thermophilus LMG 18311

49.206

94.5

0.465
  clpP Streptococcus thermophilus LMD-9

49.206

94.5

0.465
  clpP Streptococcus pneumoniae Rx1

48.677

94.5

0.46
  clpP Streptococcus pneumoniae D39

48.677

94.5

0.46
  clpP Streptococcus pneumoniae R6

48.677

94.5

0.46
  clpP Streptococcus pneumoniae TIGR4

48.677

94.5

0.46