Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MK848_RS04565 Genome accession   NZ_CP092824
Coordinates   937221..937556 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain S1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 932221..942556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK848_RS04545 (MK848_04550) gcvT 932813..933901 (-) 1089 WP_015251720.1 glycine cleavage system aminomethyltransferase GcvT -
  MK848_RS04550 (MK848_04555) hepAA 934343..936016 (+) 1674 WP_004398544.1 DEAD/DEAH box helicase -
  MK848_RS04555 (MK848_04560) yqhG 936037..936831 (+) 795 WP_003230200.1 YqhG family protein -
  MK848_RS04560 (MK848_04565) sinI 937014..937187 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  MK848_RS04565 (MK848_04570) sinR 937221..937556 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  MK848_RS04570 (MK848_04575) tasA 937649..938434 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  MK848_RS04575 (MK848_04580) sipW 938498..939070 (-) 573 WP_003246088.1 signal peptidase I SipW -
  MK848_RS04580 (MK848_04585) tapA 939054..939815 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  MK848_RS04585 (MK848_04590) yqzG 940087..940413 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  MK848_RS04590 (MK848_04595) spoIITA 940455..940634 (-) 180 WP_003230176.1 YqzE family protein -
  MK848_RS04595 (MK848_04600) comGG 940705..941079 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  MK848_RS04600 (MK848_04605) comGF 941080..941463 (-) 384 WP_015251713.1 ComG operon protein ComGF Machinery gene
  MK848_RS04605 (MK848_04610) comGE 941489..941836 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  MK848_RS04610 (MK848_04615) comGD 941820..942251 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  MK848_RS04615 (MK848_04620) comGC 942241..942537 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=660408 MK848_RS04565 WP_003226345.1 937221..937556(+) (sinR) [Bacillus subtilis strain S1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=660408 MK848_RS04565 WP_003226345.1 937221..937556(+) (sinR) [Bacillus subtilis strain S1]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1