Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   MK616_RS17210 Genome accession   NZ_CP092778
Coordinates   3506402..3507565 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus amyloliquefaciens strain WF2020     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3501402..3512565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK616_RS17180 (MK616_17180) - 3501667..3502086 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  MK616_RS17185 (MK616_17185) comFC 3502160..3502849 (-) 690 WP_240680248.1 ComF family protein Machinery gene
  MK616_RS17190 (MK616_17190) - 3502855..3503139 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  MK616_RS17195 (MK616_17195) comFA 3503197..3504582 (-) 1386 WP_160183055.1 DEAD/DEAH box helicase Machinery gene
  MK616_RS17200 (MK616_17200) - 3504690..3505538 (-) 849 WP_072177036.1 DegV family protein -
  MK616_RS17205 (MK616_17205) degU 3505636..3506325 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MK616_RS17210 (MK616_17210) degS 3506402..3507565 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  MK616_RS17215 (MK616_17215) - 3507788..3508435 (+) 648 WP_007614107.1 YigZ family protein -
  MK616_RS17220 (MK616_17220) - 3508440..3509654 (+) 1215 WP_014419013.1 LCP family protein -
  MK616_RS17225 (MK616_17225) - 3509744..3510820 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  MK616_RS17230 (MK616_17230) tuaH 3510953..3512149 (-) 1197 WP_240680096.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=660231 MK616_RS17210 WP_007407484.1 3506402..3507565(-) (degS) [Bacillus amyloliquefaciens strain WF2020]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=660231 MK616_RS17210 WP_007407484.1 3506402..3507565(-) (degS) [Bacillus amyloliquefaciens strain WF2020]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTAGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCGTTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCTGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTACGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAATGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951