Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MK616_RS17205 Genome accession   NZ_CP092778
Coordinates   3505636..3506325 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain WF2020     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3500636..3511325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK616_RS17170 (MK616_17170) - 3500834..3501316 (-) 483 WP_003151394.1 flagellar protein FlgN -
  MK616_RS17175 (MK616_17175) flgM 3501331..3501597 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  MK616_RS17180 (MK616_17180) - 3501667..3502086 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  MK616_RS17185 (MK616_17185) comFC 3502160..3502849 (-) 690 WP_240680248.1 ComF family protein Machinery gene
  MK616_RS17190 (MK616_17190) - 3502855..3503139 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  MK616_RS17195 (MK616_17195) comFA 3503197..3504582 (-) 1386 WP_160183055.1 DEAD/DEAH box helicase Machinery gene
  MK616_RS17200 (MK616_17200) - 3504690..3505538 (-) 849 WP_072177036.1 DegV family protein -
  MK616_RS17205 (MK616_17205) degU 3505636..3506325 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MK616_RS17210 (MK616_17210) degS 3506402..3507565 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  MK616_RS17215 (MK616_17215) - 3507788..3508435 (+) 648 WP_007614107.1 YigZ family protein -
  MK616_RS17220 (MK616_17220) - 3508440..3509654 (+) 1215 WP_014419013.1 LCP family protein -
  MK616_RS17225 (MK616_17225) - 3509744..3510820 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=660230 MK616_RS17205 WP_003219701.1 3505636..3506325(-) (degU) [Bacillus amyloliquefaciens strain WF2020]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=660230 MK616_RS17205 WP_003219701.1 3505636..3506325(-) (degU) [Bacillus amyloliquefaciens strain WF2020]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTTTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCGTTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1