Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MK616_RS17185 Genome accession   NZ_CP092778
Coordinates   3502160..3502849 (-) Length   229 a.a.
NCBI ID   WP_240680248.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain WF2020     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3497160..3507849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK616_RS17150 (MK616_17150) fliW 3497251..3497682 (-) 432 WP_021494095.1 flagellar assembly protein FliW -
  MK616_RS17155 (MK616_17155) - 3497712..3498281 (-) 570 WP_003151397.1 DUF6470 family protein -
  MK616_RS17160 (MK616_17160) flgL 3498372..3499289 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  MK616_RS17165 (MK616_17165) flgK 3499301..3500818 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  MK616_RS17170 (MK616_17170) - 3500834..3501316 (-) 483 WP_003151394.1 flagellar protein FlgN -
  MK616_RS17175 (MK616_17175) flgM 3501331..3501597 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  MK616_RS17180 (MK616_17180) - 3501667..3502086 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  MK616_RS17185 (MK616_17185) comFC 3502160..3502849 (-) 690 WP_240680248.1 ComF family protein Machinery gene
  MK616_RS17190 (MK616_17190) - 3502855..3503139 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  MK616_RS17195 (MK616_17195) comFA 3503197..3504582 (-) 1386 WP_160183055.1 DEAD/DEAH box helicase Machinery gene
  MK616_RS17200 (MK616_17200) - 3504690..3505538 (-) 849 WP_072177036.1 DegV family protein -
  MK616_RS17205 (MK616_17205) degU 3505636..3506325 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MK616_RS17210 (MK616_17210) degS 3506402..3507565 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25289.93 Da        Isoelectric Point: 8.2927

>NTDB_id=660228 MK616_RS17185 WP_240680248.1 3502160..3502849(-) (comFC) [Bacillus amyloliquefaciens strain WF2020]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSACSSQFEKIEGPVCSICGRPRESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=660228 MK616_RS17185 WP_240680248.1 3502160..3502849(-) (comFC) [Bacillus amyloliquefaciens strain WF2020]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCGCATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594