Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MK616_RS17195 Genome accession   NZ_CP092778
Coordinates   3503197..3504582 (-) Length   461 a.a.
NCBI ID   WP_160183055.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain WF2020     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3498197..3509582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK616_RS17160 (MK616_17160) flgL 3498372..3499289 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  MK616_RS17165 (MK616_17165) flgK 3499301..3500818 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  MK616_RS17170 (MK616_17170) - 3500834..3501316 (-) 483 WP_003151394.1 flagellar protein FlgN -
  MK616_RS17175 (MK616_17175) flgM 3501331..3501597 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  MK616_RS17180 (MK616_17180) - 3501667..3502086 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  MK616_RS17185 (MK616_17185) comFC 3502160..3502849 (-) 690 WP_240680248.1 ComF family protein Machinery gene
  MK616_RS17190 (MK616_17190) - 3502855..3503139 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  MK616_RS17195 (MK616_17195) comFA 3503197..3504582 (-) 1386 WP_160183055.1 DEAD/DEAH box helicase Machinery gene
  MK616_RS17200 (MK616_17200) - 3504690..3505538 (-) 849 WP_072177036.1 DegV family protein -
  MK616_RS17205 (MK616_17205) degU 3505636..3506325 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MK616_RS17210 (MK616_17210) degS 3506402..3507565 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  MK616_RS17215 (MK616_17215) - 3507788..3508435 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52625.03 Da        Isoelectric Point: 10.2278

>NTDB_id=660229 MK616_RS17195 WP_160183055.1 3503197..3504582(-) (comFA) [Bacillus amyloliquefaciens strain WF2020]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQTPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGHLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=660229 MK616_RS17195 WP_160183055.1 3503197..3504582(-) (comFA) [Bacillus amyloliquefaciens strain WF2020]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAACCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTTTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTCTCTGCTTTGTACGGCGGCAGCGAAGACAAAGGCCACCTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTGTTCGTCCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAGCATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(330-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623