Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   MK801_RS02900 Genome accession   NZ_CP092748
Coordinates   565163..566152 (+) Length   329 a.a.
NCBI ID   WP_015426906.1    Uniprot ID   -
Organism   Lactococcus lactis strain 17M1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 560163..571152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK801_RS02880 (MK801_02880) - 560229..561065 (-) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -
  MK801_RS02885 (MK801_02885) - 561372..562793 (+) 1422 WP_057720158.1 NCS2 family permease -
  MK801_RS02890 (MK801_02890) - 563003..563851 (+) 849 WP_254255670.1 alpha/beta hydrolase -
  MK801_RS02895 (MK801_02895) - 564004..565089 (+) 1086 WP_057720154.1 YdcF family protein -
  MK801_RS02900 (MK801_02900) coiA 565163..566152 (+) 990 WP_015426906.1 competence protein CoiA Machinery gene
  MK801_RS02905 (MK801_02905) pepF 566215..568020 (+) 1806 WP_057720149.1 oligoendopeptidase F Regulator
  MK801_RS02910 (MK801_02910) - 568023..568706 (+) 684 WP_057720148.1 O-methyltransferase -
  MK801_RS02915 (MK801_02915) - 568860..569786 (+) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39424.10 Da        Isoelectric Point: 9.0820

>NTDB_id=659965 MK801_RS02900 WP_015426906.1 565163..566152(+) (coiA) [Lactococcus lactis strain 17M1]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMPHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYIPEFKQRPDLLVNDKIAIEIQCSHLSMKRLKERTENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSENR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGEGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDKIPLHKFTQIKQNINLYYENFLINFQQNSFKAVYPPRFYAIM
KKQKKDMNK

Nucleotide


Download         Length: 990 bp        

>NTDB_id=659965 MK801_RS02900 WP_015426906.1 565163..566152(+) (coiA) [Lactococcus lactis strain 17M1]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGCCTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATATTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATAAAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAAAGGACAGAGAATTATCAAGTCCACGGTTTTACGGTGCTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGGAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCGGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTACCAGAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCTTTTATTGCGCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATAAAATTCCTTTACATAAATTTACTCAAATTAAGCAGAATATTAACC
TCTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGCAGTCTATCCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATAAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

75.153

99.088

0.745
  coiA Streptococcus mitis NCTC 12261

43.789

97.872

0.429
  coiA Streptococcus pneumoniae TIGR4

43.478

97.872

0.426
  coiA Streptococcus pneumoniae Rx1

43.478

97.872

0.426
  coiA Streptococcus pneumoniae D39

43.478

97.872

0.426
  coiA Streptococcus pneumoniae R6

43.478

97.872

0.426