Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG384_RS28795 Genome accession   NZ_CP108385
Coordinates   6313878..6314672 (-) Length   264 a.a.
NCBI ID   WP_327339351.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01324     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6308878..6319672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG384_RS28780 (OG384_28785) - 6308945..6309733 (+) 789 WP_327339348.1 GNAT family N-acetyltransferase -
  OG384_RS28785 (OG384_28790) - 6309794..6311758 (+) 1965 WP_327339349.1 IucA/IucC family siderophore biosynthesis protein -
  OG384_RS28790 (OG384_28795) - 6311809..6313779 (+) 1971 WP_327339350.1 ATP-dependent DNA helicase -
  OG384_RS28795 (OG384_28800) dinR/lexA 6313878..6314672 (-) 795 WP_327339351.1 transcriptional repressor LexA Regulator
  OG384_RS28800 (OG384_28805) nrdR 6315207..6315719 (+) 513 WP_073737717.1 transcriptional regulator NrdR -
  OG384_RS28805 (OG384_28810) - 6315879..6318785 (+) 2907 WP_327339352.1 vitamin B12-dependent ribonucleotide reductase -
  OG384_RS28810 (OG384_28815) - 6318889..6319425 (-) 537 WP_327339353.1 TerD family protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28639.33 Da        Isoelectric Point: 7.4242

>NTDB_id=659779 OG384_RS28795 WP_327339351.1 6313878..6314672(-) (dinR/lexA) [Streptomyces sp. NBC_01324]
MTTTADSATITAQDRSQSRREPVHAMNDSATNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=659779 OG384_RS28795 WP_327339351.1 6313878..6314672(-) (dinR/lexA) [Streptomyces sp. NBC_01324]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACGTGAGCCGGTGCATGCCATGAA
TGACTCAGCCACGAATACGGAGGGGCCCGAGCCCGCGCGCCCAGCGCGCTCGCTTCCCGGGCGACCTCCTGGAATCCGGG
CGGACAGCTCAGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTCATCCGGGACTCCGTGCAGCGGCGGGGATATCCC
CCGTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTTTCCAGTACGTCCTCCGTCGCGCATCAGCTCATGGCTCTGGAACG
CAAGGGGTTCCTGCGCCGTGACCCCCACCGACCCCGGGCGTACGAGGTTCGCGGTTCGGACCAGCCCAGCACGCAGCCCA
CGGACACCACCGGGAAGCCCGCGGCTTCGTACGTTCCGTTGGTCGGCCGGATCGCGGCCGGTGGTCCGATCCTCGCCGAG
GAGTCCGTCGAGGACGTCTTTCCGCTTCCCCGCCAGCTGGTCGGTGACGGCGAGCTTTTCGTCCTCAAGGTCGTCGGTGA
CTCGATGATCGAAGCGGCGATCTGTGACGGGGACTGGGTCACGGTCCGGCGCCAGCCCGTGGCGGAGAACGGCGACATCG
TGGCGGCGATGCTGGAGGGCGAGGCCACGGTCAAGCGCTTCAAGCGGGAGGACGGTCATGTCTGGCTGCTCCCCCACAAC
TCCGCGTACCAGCCGATTCCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371