Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   AVFI_RS04660 Genome accession   NZ_CP092712
Coordinates   983158..983787 (+) Length   209 a.a.
NCBI ID   WP_081300364.1    Uniprot ID   -
Organism   Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 978158..988787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVFI_RS04640 (AVFI_04640) panP 978404..980047 (-) 1644 WP_017018415.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  AVFI_RS04645 (AVFI_04645) - 980222..980734 (-) 513 WP_017018414.1 hypothetical protein -
  AVFI_RS04650 (AVFI_04650) - 980871..981770 (-) 900 WP_017018413.1 lysine exporter LysO family protein -
  AVFI_RS04655 (AVFI_04655) - 981861..982784 (-) 924 WP_054775307.1 HDOD domain-containing protein -
  AVFI_RS04660 (AVFI_04660) tfoX 983158..983787 (+) 630 WP_081300364.1 DNA transformation protein TfoX Regulator
  AVFI_RS04665 (AVFI_04665) - 983878..984426 (-) 549 WP_005418478.1 hypothetical protein -
  AVFI_RS04670 (AVFI_04670) - 984702..986003 (+) 1302 WP_017018409.1 DUF945 family protein -
  AVFI_RS04675 (AVFI_04675) serC 986201..987283 (+) 1083 WP_054775308.1 3-phosphoserine/phosphohydroxythreonine transaminase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23855.52 Da        Isoelectric Point: 8.8400

>NTDB_id=659779 AVFI_RS04660 WP_081300364.1 983158..983787(+) (tfoX) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MTGTGDVNLKIKEIEMSHLEERFFNFVKKLGRFNKRSMFGGVGLFTEDAMFSLVTDGRLYVRGGGEVDARFEELGCERFK
HVKKTTIATVNYFDVTELFEKKPASLLSIVQEAMENSRLEREFKKSKENRRLRDLPNMQLTLERMVKKAGVPDVDSFLEI
GAVDVFKKVNHTYGGDVDVKLLWKFAGAESGVHWTLLQEPAKQALLQQV

Nucleotide


Download         Length: 630 bp        

>NTDB_id=659779 AVFI_RS04660 WP_081300364.1 983158..983787(+) (tfoX) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGACAGGGACGGGGGATGTTAATTTAAAGATCAAGGAGATCGAGATGAGTCATCTAGAAGAGCGCTTTTTTAACTTTGT
AAAAAAACTGGGAAGATTCAATAAACGTTCAATGTTTGGTGGTGTTGGTTTGTTTACCGAAGACGCCATGTTCTCGCTAG
TTACTGATGGACGACTATATGTACGCGGTGGTGGTGAGGTTGATGCTCGGTTTGAAGAGTTAGGTTGTGAGCGTTTCAAG
CATGTTAAGAAGACGACAATTGCGACTGTAAATTATTTTGATGTTACTGAGTTATTTGAAAAGAAACCAGCTTCTCTTCT
TTCTATTGTTCAAGAAGCTATGGAAAACTCTCGTTTAGAAAGAGAGTTTAAAAAATCAAAAGAAAACCGCCGTTTACGTG
ACTTACCGAATATGCAACTGACATTAGAAAGAATGGTCAAAAAAGCAGGAGTACCTGATGTTGATTCATTTCTGGAAATT
GGTGCTGTTGATGTATTTAAAAAAGTGAATCACACCTATGGTGGTGATGTTGATGTTAAGTTACTTTGGAAATTTGCAGG
TGCAGAATCAGGAGTTCATTGGACGTTATTACAAGAGCCTGCAAAGCAAGCATTATTACAACAAGTTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(129-208)

TfoX N-terminal domain (TfoX_N)

(27-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Aliivibrio fischeri ES114

99.522

100

0.995
  tfoX Vibrio campbellii strain DS40M4

59.162

91.388

0.541
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

59.043

89.952

0.531
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

59.043

89.952

0.531
  tfoX Vibrio cholerae strain A1552

59.043

89.952

0.531
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

59.043

89.952

0.531
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

59.043

89.952

0.531
  tfoX Vibrio parahaemolyticus RIMD 2210633

57.068

91.388

0.522